miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 3' -52.1 NC_006151.1 + 131866 0.75 0.648791
Target:  5'- --cGCgccggCGGCGUCGGGUcGCAGGGCa -3'
miRNA:   3'- acaCGaa---GCUGUAGCUCA-CGUUCCGg -5'
29539 3' -52.1 NC_006151.1 + 84072 0.73 0.732053
Target:  5'- cUGUGCUUCGuCAUCGAGcuCAAGacguGCCg -3'
miRNA:   3'- -ACACGAAGCuGUAGCUCacGUUC----CGG- -5'
29539 3' -52.1 NC_006151.1 + 64535 0.73 0.762028
Target:  5'- --cGCggCcGCGUCGGGggcgGCGAGGCCg -3'
miRNA:   3'- acaCGaaGcUGUAGCUCa---CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 134777 0.72 0.809393
Target:  5'- --gGCUUCGGCuccaCGGGccUGUGAGGCCg -3'
miRNA:   3'- acaCGAAGCUGua--GCUC--ACGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 86238 0.71 0.818389
Target:  5'- --cGCUgCGACAUCGGcgccGUGCu-GGCCg -3'
miRNA:   3'- acaCGAaGCUGUAGCU----CACGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 5722 0.71 0.83583
Target:  5'- cUGUGCUggUGGCGcCGGGgucCGAGGCCg -3'
miRNA:   3'- -ACACGAa-GCUGUaGCUCac-GUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 74314 0.71 0.860489
Target:  5'- --gGCgUCGugGUgCGGGUGCAGGGgCu -3'
miRNA:   3'- acaCGaAGCugUA-GCUCACGUUCCgG- -5'
29539 3' -52.1 NC_006151.1 + 54596 0.7 0.87584
Target:  5'- gUGUGCcUCGGCGUgGucccGGUGCGccGGGCg -3'
miRNA:   3'- -ACACGaAGCUGUAgC----UCACGU--UCCGg -5'
29539 3' -52.1 NC_006151.1 + 33128 0.7 0.890262
Target:  5'- cGUGCcgCGGgccgaguguCGggCGAGUGCGAGGCg -3'
miRNA:   3'- aCACGaaGCU---------GUa-GCUCACGUUCCGg -5'
29539 3' -52.1 NC_006151.1 + 122228 0.69 0.903715
Target:  5'- gUGUGCUUCGAgGagcuGUGCGugacGGCCa -3'
miRNA:   3'- -ACACGAAGCUgUagcuCACGUu---CCGG- -5'
29539 3' -52.1 NC_006151.1 + 131016 0.69 0.903715
Target:  5'- cGUGC--CGGCGUagCGGGUG-AAGGCCu -3'
miRNA:   3'- aCACGaaGCUGUA--GCUCACgUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 61777 0.69 0.91617
Target:  5'- gGUGCUgCGGCG-CGAG-GCc-GGCCg -3'
miRNA:   3'- aCACGAaGCUGUaGCUCaCGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 95036 0.69 0.91617
Target:  5'- cUGUGC-UCGAagcCGUCGaAGggGCGcAGGCCg -3'
miRNA:   3'- -ACACGaAGCU---GUAGC-UCa-CGU-UCCGG- -5'
29539 3' -52.1 NC_006151.1 + 98197 0.69 0.92761
Target:  5'- cGUcGCgccgcgCGGgGUCGAGUGCGcGGCg -3'
miRNA:   3'- aCA-CGaa----GCUgUAGCUCACGUuCCGg -5'
29539 3' -52.1 NC_006151.1 + 54434 0.68 0.932947
Target:  5'- --cGCUUCGGCGaCGAG-GCGcccgccguGGCCg -3'
miRNA:   3'- acaCGAAGCUGUaGCUCaCGUu-------CCGG- -5'
29539 3' -52.1 NC_006151.1 + 77640 0.68 0.938029
Target:  5'- cGUGUa-CGACcccuaccucGUCGAGUGCAuGGUCu -3'
miRNA:   3'- aCACGaaGCUG---------UAGCUCACGUuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 137579 0.68 0.942857
Target:  5'- cGUGCgaCGACGaCGAG-GuCGGGGUCg -3'
miRNA:   3'- aCACGaaGCUGUaGCUCaC-GUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 91221 0.68 0.942857
Target:  5'- cGUGCUUguagacgcaggCGACGcUCGGGgaGCcGGGCCc -3'
miRNA:   3'- aCACGAA-----------GCUGU-AGCUCa-CGuUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 44926 0.68 0.947434
Target:  5'- gUGUGC----GCGUaaAGUGCGAGGCCc -3'
miRNA:   3'- -ACACGaagcUGUAgcUCACGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 82056 0.68 0.947878
Target:  5'- cGUGCacguaggcggccacgUCGcGCAUCGucuGGUGCAuGGCCc -3'
miRNA:   3'- aCACGa--------------AGC-UGUAGC---UCACGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.