miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 3' -52.1 NC_006151.1 + 5722 0.71 0.83583
Target:  5'- cUGUGCUggUGGCGcCGGGgucCGAGGCCg -3'
miRNA:   3'- -ACACGAa-GCUGUaGCUCac-GUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 21531 0.66 0.972741
Target:  5'- --gGCUUCGGC--CGGG-GCcGGGGCCg -3'
miRNA:   3'- acaCGAAGCUGuaGCUCaCG-UUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 33128 0.7 0.890262
Target:  5'- cGUGCcgCGGgccgaguguCGggCGAGUGCGAGGCg -3'
miRNA:   3'- aCACGaaGCU---------GUa-GCUCACGUUCCGg -5'
29539 3' -52.1 NC_006151.1 + 37548 0.66 0.972741
Target:  5'- cGUGCgccucaUCuACAgCGGGgccgccgGCGAGGCCa -3'
miRNA:   3'- aCACGa-----AGcUGUaGCUCa------CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 44823 0.67 0.969811
Target:  5'- gGUGCgagGGCGUCGGGacCGGGGCg -3'
miRNA:   3'- aCACGaagCUGUAGCUCacGUUCCGg -5'
29539 3' -52.1 NC_006151.1 + 44926 0.68 0.947434
Target:  5'- gUGUGC----GCGUaaAGUGCGAGGCCc -3'
miRNA:   3'- -ACACGaagcUGUAgcUCACGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 45285 0.66 0.972741
Target:  5'- gGUGag-CGGCGgucguccCGAGgacccGCGAGGCCg -3'
miRNA:   3'- aCACgaaGCUGUa------GCUCa----CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 51165 0.67 0.959685
Target:  5'- --cGCggUGAUggUGAcGUGCAGGGCCc -3'
miRNA:   3'- acaCGaaGCUGuaGCU-CACGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 54434 0.68 0.932947
Target:  5'- --cGCUUCGGCGaCGAG-GCGcccgccguGGCCg -3'
miRNA:   3'- acaCGAAGCUGUaGCUCaCGUu-------CCGG- -5'
29539 3' -52.1 NC_006151.1 + 54516 0.66 0.982428
Target:  5'- uUGUGCg-CGGCAUCGcGGccUGCuucucGGCCa -3'
miRNA:   3'- -ACACGaaGCUGUAGC-UC--ACGuu---CCGG- -5'
29539 3' -52.1 NC_006151.1 + 54596 0.7 0.87584
Target:  5'- gUGUGCcUCGGCGUgGucccGGUGCGccGGGCg -3'
miRNA:   3'- -ACACGaAGCUGUAgC----UCACGU--UCCGg -5'
29539 3' -52.1 NC_006151.1 + 61777 0.69 0.91617
Target:  5'- gGUGCUgCGGCG-CGAG-GCc-GGCCg -3'
miRNA:   3'- aCACGAaGCUGUaGCUCaCGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 61822 0.66 0.982428
Target:  5'- gGUGCUcuacgCGGCGUCGAcgGU--GGCCg -3'
miRNA:   3'- aCACGAa----GCUGUAGCUcaCGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 62229 0.66 0.982428
Target:  5'- gGUGUUcgUCGAgGUCGucGUGUccGGCUa -3'
miRNA:   3'- aCACGA--AGCUgUAGCu-CACGuuCCGG- -5'
29539 3' -52.1 NC_006151.1 + 64535 0.73 0.762028
Target:  5'- --cGCggCcGCGUCGGGggcgGCGAGGCCg -3'
miRNA:   3'- acaCGaaGcUGUAGCUCa---CGUUCCGG- -5'
29539 3' -52.1 NC_006151.1 + 70959 0.66 0.973854
Target:  5'- gGUGCgcgUGGcCGUCGAGgGCAAcagcagccaggacucGGCCg -3'
miRNA:   3'- aCACGaa-GCU-GUAGCUCaCGUU---------------CCGG- -5'
29539 3' -52.1 NC_006151.1 + 74314 0.71 0.860489
Target:  5'- --gGCgUCGugGUgCGGGUGCAGGGgCu -3'
miRNA:   3'- acaCGaAGCugUA-GCUCACGUUCCgG- -5'
29539 3' -52.1 NC_006151.1 + 75386 0.66 0.971885
Target:  5'- aGUGCa-CGGCGcggggCGGGUGCGugcgcggguccgggAGGCCc -3'
miRNA:   3'- aCACGaaGCUGUa----GCUCACGU--------------UCCGG- -5'
29539 3' -52.1 NC_006151.1 + 76014 0.67 0.959685
Target:  5'- --aGCUcCGACA-CGAGcGCGgcgcAGGCCa -3'
miRNA:   3'- acaCGAaGCUGUaGCUCaCGU----UCCGG- -5'
29539 3' -52.1 NC_006151.1 + 77640 0.68 0.938029
Target:  5'- cGUGUa-CGACcccuaccucGUCGAGUGCAuGGUCu -3'
miRNA:   3'- aCACGaaGCUG---------UAGCUCACGUuCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.