miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 5' -61.8 NC_006151.1 + 3623 0.83 0.067349
Target:  5'- cGUGGCCgUCCCCGCggagggccgCGCCGgAGAGCCCc -3'
miRNA:   3'- -CGCCGGaAGGGGCG---------GCGGC-UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 34026 0.82 0.072726
Target:  5'- cCGGCCcUCCCCGCCGggaaGGGGACCCg -3'
miRNA:   3'- cGCCGGaAGGGGCGGCgg--CUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 109452 0.82 0.082617
Target:  5'- cGCGGCCggCCCCGaCGCCGgagcggcacggGGAGCCCc -3'
miRNA:   3'- -CGCCGGaaGGGGCgGCGGC-----------UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 101757 0.81 0.096182
Target:  5'- gGCGGCCg-CCgCGCCGCCGAcgcgGGGCCCc -3'
miRNA:   3'- -CGCCGGaaGGgGCGGCGGCU----CUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 109587 0.8 0.110998
Target:  5'- cCGGCCcgcccgcgcucuucaCCCCGCCGCCGucGGACCCg -3'
miRNA:   3'- cGCCGGaa-------------GGGGCGGCGGCu-CUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 15338 0.8 0.111835
Target:  5'- cGCGuCCUcUCCCCGCCGgucaUCGAGGGCCCg -3'
miRNA:   3'- -CGCcGGA-AGGGGCGGC----GGCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 104163 0.79 0.114665
Target:  5'- cGCGGagCUgcgCCCCGCCGCCGAGcGCgCg -3'
miRNA:   3'- -CGCCg-GAa--GGGGCGGCGGCUCuUGgG- -5'
29539 5' -61.8 NC_006151.1 + 50778 0.79 0.114665
Target:  5'- aCGGCCgccccgacgCCCCaGCUGCCGAGAcCCCg -3'
miRNA:   3'- cGCCGGaa-------GGGG-CGGCGGCUCUuGGG- -5'
29539 5' -61.8 NC_006151.1 + 91927 0.79 0.120528
Target:  5'- -aGGCCaUCuCCaCGCCGCCGGGggUCCu -3'
miRNA:   3'- cgCCGGaAG-GG-GCGGCGGCUCuuGGG- -5'
29539 5' -61.8 NC_006151.1 + 37227 0.79 0.120528
Target:  5'- cGCGGCCUcCCCgGCC-CCGgccccGGAGCCCg -3'
miRNA:   3'- -CGCCGGAaGGGgCGGcGGC-----UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 76862 0.78 0.136424
Target:  5'- -aGGCCagCCgCGCCGCCGccaGGAGCCCc -3'
miRNA:   3'- cgCCGGaaGGgGCGGCGGC---UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 4121 0.78 0.139827
Target:  5'- cGCGGCCUgCCgCCGCUcgGCCGGGccGGCCCc -3'
miRNA:   3'- -CGCCGGAaGG-GGCGG--CGGCUC--UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 66556 0.78 0.139827
Target:  5'- cGCGGCCg----CGCCGCCGuGGACCCg -3'
miRNA:   3'- -CGCCGGaagggGCGGCGGCuCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 39900 0.78 0.139827
Target:  5'- uGCGcGCCUUCUgCGCCGCgGgcugcuGGAGCCCg -3'
miRNA:   3'- -CGC-CGGAAGGgGCGGCGgC------UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 135919 0.78 0.146866
Target:  5'- gGCGGUCgugcgcgcgCUCUGCCGCgGGGAGCCCc -3'
miRNA:   3'- -CGCCGGaa-------GGGGCGGCGgCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 38276 0.78 0.146866
Target:  5'- cGUGGCCgcggCCCgGCuCGCCGAGGccgccgcgcgGCCCg -3'
miRNA:   3'- -CGCCGGaa--GGGgCG-GCGGCUCU----------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 50351 0.78 0.150505
Target:  5'- cGCGGCCUcccgccgcgUCUCCGCCGgCGGGGgcgagacgcggGCCCc -3'
miRNA:   3'- -CGCCGGA---------AGGGGCGGCgGCUCU-----------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 38512 0.77 0.154227
Target:  5'- cCGGCuacgccagCUcCCCCGCCGCCGGcccGGACCCa -3'
miRNA:   3'- cGCCG--------GAaGGGGCGGCGGCU---CUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 39845 0.77 0.154227
Target:  5'- uGCGGCCgccggggCCUCGCCGagcuccgcggccCCGAGGGCCUg -3'
miRNA:   3'- -CGCCGGaa-----GGGGCGGC------------GGCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 36080 0.77 0.154227
Target:  5'- gGCGGCCUcuucUCCgacgaCGCCGCCGAG-GCCg -3'
miRNA:   3'- -CGCCGGA----AGGg----GCGGCGGCUCuUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.