miRNA display CGI


Results 1 - 20 of 431 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29539 5' -61.8 NC_006151.1 + 661 0.72 0.322099
Target:  5'- cGCGGCCggggcgggCUCCGCggaucgcaucggcgCGCCGAGccuGCCCc -3'
miRNA:   3'- -CGCCGGaa------GGGGCG--------------GCGGCUCu--UGGG- -5'
29539 5' -61.8 NC_006151.1 + 1660 0.7 0.416642
Target:  5'- aGgGGaCCgggacgaUCCuCCGCCGCCGA--GCCCu -3'
miRNA:   3'- -CgCC-GGa------AGG-GGCGGCGGCUcuUGGG- -5'
29539 5' -61.8 NC_006151.1 + 1698 0.68 0.551897
Target:  5'- cGCGGCCg---CCGCCGCCGcu--UCCa -3'
miRNA:   3'- -CGCCGGaaggGGCGGCGGCucuuGGG- -5'
29539 5' -61.8 NC_006151.1 + 1725 0.66 0.639221
Target:  5'- cGCcGCCaccUCCgCCGCCGCCGcAGccACCUc -3'
miRNA:   3'- -CGcCGGa--AGG-GGCGGCGGC-UCu-UGGG- -5'
29539 5' -61.8 NC_006151.1 + 2063 0.75 0.220798
Target:  5'- uCGGCC-UCCUCGUCGuCCGAGAugGCCUc -3'
miRNA:   3'- cGCCGGaAGGGGCGGC-GGCUCU--UGGG- -5'
29539 5' -61.8 NC_006151.1 + 2117 0.74 0.265487
Target:  5'- cGgGGCCggCCgUCGCCGCCGcGGACgCCg -3'
miRNA:   3'- -CgCCGGaaGG-GGCGGCGGCuCUUG-GG- -5'
29539 5' -61.8 NC_006151.1 + 2175 0.76 0.200957
Target:  5'- cGgGGCCggCCCCGgCGcCCGAGGcCCCc -3'
miRNA:   3'- -CgCCGGaaGGGGCgGC-GGCUCUuGGG- -5'
29539 5' -61.8 NC_006151.1 + 2384 0.66 0.668473
Target:  5'- uCGGCCggcaggCCCUcgggGCCGCgGAGcucggcgaGGCCCc -3'
miRNA:   3'- cGCCGGaa----GGGG----CGGCGgCUC--------UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 2965 0.68 0.570134
Target:  5'- gGCGaaGCCgaggUCCCG-CGCCGAGAgcagagcACCCc -3'
miRNA:   3'- -CGC--CGGaa--GGGGCgGCGGCUCU-------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 3116 0.66 0.67818
Target:  5'- cGCGGCgCgggUCCCagGCCggGCgCGGGGcGCCCu -3'
miRNA:   3'- -CGCCG-Ga--AGGGg-CGG--CG-GCUCU-UGGG- -5'
29539 5' -61.8 NC_006151.1 + 3409 0.67 0.590455
Target:  5'- cGCGGCgUgugggUCUCGCCgGCCGGGAcgcggcggaaGCCg -3'
miRNA:   3'- -CGCCGgAa----GGGGCGG-CGGCUCU----------UGGg -5'
29539 5' -61.8 NC_006151.1 + 3623 0.83 0.067349
Target:  5'- cGUGGCCgUCCCCGCggagggccgCGCCGgAGAGCCCc -3'
miRNA:   3'- -CGCCGGaAGGGGCG---------GCGGC-UCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 3701 0.67 0.609923
Target:  5'- cGCGGCgCUUCUUcuugCGCCGCuCGGGcGCUg -3'
miRNA:   3'- -CGCCG-GAAGGG----GCGGCG-GCUCuUGGg -5'
29539 5' -61.8 NC_006151.1 + 3862 0.68 0.54237
Target:  5'- -aGGCCggagggggCgCCCGCCGCCGccGGCgCCg -3'
miRNA:   3'- cgCCGGaa------G-GGGCGGCGGCucUUG-GG- -5'
29539 5' -61.8 NC_006151.1 + 4121 0.78 0.139827
Target:  5'- cGCGGCCUgCCgCCGCUcgGCCGGGccGGCCCc -3'
miRNA:   3'- -CGCCGGAaGG-GGCGG--CGGCUC--UUGGG- -5'
29539 5' -61.8 NC_006151.1 + 4372 0.7 0.433544
Target:  5'- -gGGCCUcgacggucgccUCCCCGgCGCgGGGGuccgcggcgcgGCCCg -3'
miRNA:   3'- cgCCGGA-----------AGGGGCgGCGgCUCU-----------UGGG- -5'
29539 5' -61.8 NC_006151.1 + 4695 0.7 0.459627
Target:  5'- aUGGCCUcgccggcggCCCCGCUGUagaugaggcgcaCGAGGGCCUc -3'
miRNA:   3'- cGCCGGAa--------GGGGCGGCG------------GCUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 4814 0.72 0.324204
Target:  5'- cGCGGCCUggcggacgucgUCCUCGUC-CC-AGAGCCCc -3'
miRNA:   3'- -CGCCGGA-----------AGGGGCGGcGGcUCUUGGG- -5'
29539 5' -61.8 NC_006151.1 + 4852 0.66 0.65874
Target:  5'- cGCGGgagUCCCCggcGCCGCCGuagcGGACgCg -3'
miRNA:   3'- -CGCCggaAGGGG---CGGCGGCu---CUUGgG- -5'
29539 5' -61.8 NC_006151.1 + 4938 0.7 0.459627
Target:  5'- aGCGGCCcg-UCgGUCGgCGGGGGCCCg -3'
miRNA:   3'- -CGCCGGaagGGgCGGCgGCUCUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.