miRNA display CGI


Results 41 - 60 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 137408 0.66 0.770047
Target:  5'- cGCCGgggGGCGCc-CUCGCCGcCGcCGCg -3'
miRNA:   3'- -CGGCa--CCGCGccGAGCGGUuGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 64959 0.66 0.770047
Target:  5'- cGCUGcgGGCGCaGGCcgagCGCCAcguccaGCAgCACg -3'
miRNA:   3'- -CGGCa-CCGCG-CCGa---GCGGU------UGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 135814 0.66 0.770047
Target:  5'- cGCCGaGGCcgagcuuuuaGCGcGC-CGCCccGGCGUCACg -3'
miRNA:   3'- -CGGCaCCG----------CGC-CGaGCGG--UUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 142985 0.66 0.770047
Target:  5'- uGCCGcgGGUG-GGCcCGaCCGcaGCAUCGCg -3'
miRNA:   3'- -CGGCa-CCGCgCCGaGC-GGU--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 37361 0.66 0.770047
Target:  5'- aGCCcUGGCcCGGCUCcgacccuccgGCCGACGgcCGCg -3'
miRNA:   3'- -CGGcACCGcGCCGAG----------CGGUUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 73688 0.67 0.764444
Target:  5'- cUCGUcGGCGCGGCUCugcgccgcgugcuggGCCAcggGCuggCGCa -3'
miRNA:   3'- cGGCA-CCGCGCCGAG---------------CGGU---UGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 136646 0.67 0.760685
Target:  5'- cCCGUGGgGC-GCUCGCCccucggggAGCG-CGCg -3'
miRNA:   3'- cGGCACCgCGcCGAGCGG--------UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 128690 0.67 0.760685
Target:  5'- -aCGUGGC-CGcGUaCGCCAGCAUCuCg -3'
miRNA:   3'- cgGCACCGcGC-CGaGCGGUUGUAGuG- -5'
29540 5' -58.5 NC_006151.1 + 20144 0.67 0.760685
Target:  5'- cGCCGcgGGgGCGGCgcguggacCGCCgGGCcgCGCc -3'
miRNA:   3'- -CGGCa-CCgCGCCGa-------GCGG-UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 98212 0.67 0.760685
Target:  5'- gGUCGaGuGCGCGGCggCGCCcGCG-CGCg -3'
miRNA:   3'- -CGGCaC-CGCGCCGa-GCGGuUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 129869 0.67 0.759743
Target:  5'- cCCGUGGCGUcGCgCGCCGccGCcaccucgGUCGCg -3'
miRNA:   3'- cGGCACCGCGcCGaGCGGU--UG-------UAGUG- -5'
29540 5' -58.5 NC_006151.1 + 89054 0.67 0.759743
Target:  5'- cCCGU-GCGCGGUggccuugUCGCCGugGaCGCg -3'
miRNA:   3'- cGGCAcCGCGCCG-------AGCGGUugUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 95394 0.67 0.751211
Target:  5'- cGCCG-GGCGUGGCcCGCUg----CACg -3'
miRNA:   3'- -CGGCaCCGCGCCGaGCGGuuguaGUG- -5'
29540 5' -58.5 NC_006151.1 + 97992 0.67 0.751211
Target:  5'- uGCCGggcGGCGUGGC-CGCguaGGCggCGCc -3'
miRNA:   3'- -CGGCa--CCGCGCCGaGCGg--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 98648 0.67 0.751211
Target:  5'- gGCCcuggcgGGCGCGcGCUCcGCCGACG--ACg -3'
miRNA:   3'- -CGGca----CCGCGC-CGAG-CGGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 99346 0.67 0.751211
Target:  5'- cGCCGUcGGCugcacgGCGGUcgUCGgCGGCGUCGu -3'
miRNA:   3'- -CGGCA-CCG------CGCCG--AGCgGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 104067 0.67 0.751211
Target:  5'- gGCCGacgcGGCGCuGCgccgCGCCgAGCAgCACg -3'
miRNA:   3'- -CGGCa---CCGCGcCGa---GCGG-UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 117202 0.67 0.751211
Target:  5'- cGUCGUaguaguagacgGGCGCGGCgUCGaCGACG-CGCg -3'
miRNA:   3'- -CGGCA-----------CCGCGCCG-AGCgGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 130245 0.67 0.751211
Target:  5'- aGCCGcagaaGGCGCGGaagagGCCGGCG-CGCg -3'
miRNA:   3'- -CGGCa----CCGCGCCgag--CGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 78835 0.67 0.751211
Target:  5'- aGCUGUuugGGCGCGcCUgacccgCGCCAACAUCu- -3'
miRNA:   3'- -CGGCA---CCGCGCcGA------GCGGUUGUAGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.