miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 20065 0.7 0.531987
Target:  5'- gGCCagcuucUGGCGaaGCUCgGCCAACGUCAUc -3'
miRNA:   3'- -CGGc-----ACCGCgcCGAG-CGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 20144 0.67 0.760685
Target:  5'- cGCCGcgGGgGCGGCgcguggacCGCCgGGCcgCGCc -3'
miRNA:   3'- -CGGCa-CCgCGCCGa-------GCGG-UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 20311 0.71 0.483995
Target:  5'- cGCCGUGGCguugGCGGCg-GCgAGCAggacgCGCg -3'
miRNA:   3'- -CGGCACCG----CGCCGagCGgUUGUa----GUG- -5'
29540 5' -58.5 NC_006151.1 + 20780 0.69 0.621935
Target:  5'- cGCCG-GGCgaGCGGCUCGC--GCuugCGCa -3'
miRNA:   3'- -CGGCaCCG--CGCCGAGCGguUGua-GUG- -5'
29540 5' -58.5 NC_006151.1 + 21479 0.71 0.493435
Target:  5'- cGCCGgcucgGGCagGCGGCcggggggCGCgGGCGUCACc -3'
miRNA:   3'- -CGGCa----CCG--CGCCGa------GCGgUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 21970 0.72 0.447145
Target:  5'- cGgCGUGGUGCGGC--GCCGGCAgCGCc -3'
miRNA:   3'- -CgGCACCGCGCCGagCGGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 25333 0.69 0.621935
Target:  5'- cGCCGggacGGC-CGGCgUGCCGcgAUAUCACa -3'
miRNA:   3'- -CGGCa---CCGcGCCGaGCGGU--UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 26868 0.67 0.722211
Target:  5'- aGCC--GGCGuCGucCUCGUCGACGUCGCa -3'
miRNA:   3'- -CGGcaCCGC-GCc-GAGCGGUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 28107 0.68 0.652301
Target:  5'- aGCgG-GGCGCGGCuccUCGUCGGCucggggCGCg -3'
miRNA:   3'- -CGgCaCCGCGCCG---AGCGGUUGua----GUG- -5'
29540 5' -58.5 NC_006151.1 + 31611 0.68 0.692529
Target:  5'- cGCCGccugGGCGgGGaugccgCGCCGGCAcgagCGCa -3'
miRNA:   3'- -CGGCa---CCGCgCCga----GCGGUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 33268 0.67 0.748349
Target:  5'- gGCgGUGGCgGCGGCcaUCGCCcgacccuuccccggGGCG-CGCg -3'
miRNA:   3'- -CGgCACCG-CGCCG--AGCGG--------------UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 36519 0.71 0.512562
Target:  5'- gGCCGgcGGCGCGGCcUCGgaccCCGGCGcCACc -3'
miRNA:   3'- -CGGCa-CCGCGCCG-AGC----GGUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 36661 0.68 0.702484
Target:  5'- cGCCGgagGGgacCGCGG-UCGUCAcCAUCACc -3'
miRNA:   3'- -CGGCa--CC---GCGCCgAGCGGUuGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 37361 0.66 0.770047
Target:  5'- aGCCcUGGCcCGGCUCcgacccuccgGCCGACGgcCGCg -3'
miRNA:   3'- -CGGcACCGcGCCGAG----------CGGUUGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 38279 0.76 0.269976
Target:  5'- gGCCGcGGCcCGGCUCGCCGaggccGCcgCGCg -3'
miRNA:   3'- -CGGCaCCGcGCCGAGCGGU-----UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 39005 0.66 0.806206
Target:  5'- cGCCGcGGCGCcccGCUCcGCC-GCcgCGCc -3'
miRNA:   3'- -CGGCaCCGCGc--CGAG-CGGuUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 39167 0.68 0.692529
Target:  5'- gGCCucucGGCGCuGCUCGCCGcCuUCGCc -3'
miRNA:   3'- -CGGca--CCGCGcCGAGCGGUuGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 39339 0.71 0.483995
Target:  5'- cGCgGcucGGCGCGGCgcggCGCCGGC-UCAUc -3'
miRNA:   3'- -CGgCa--CCGCGCCGa---GCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 44069 0.67 0.712381
Target:  5'- aCgGUGGUGCGGUUUGgUAGCAgacgaUCACc -3'
miRNA:   3'- cGgCACCGCGCCGAGCgGUUGU-----AGUG- -5'
29540 5' -58.5 NC_006151.1 + 45415 0.7 0.541799
Target:  5'- uGCCGguguguugugGGCcgGgGGUUCGCgGGCGUCGCa -3'
miRNA:   3'- -CGGCa---------CCG--CgCCGAGCGgUUGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.