miRNA display CGI


Results 1 - 20 of 237 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 664 0.66 0.788402
Target:  5'- gGCCGgGGCG-GGCUCcGCgGAUcgCAUc -3'
miRNA:   3'- -CGGCaCCGCgCCGAG-CGgUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 3132 0.7 0.581585
Target:  5'- gGCCG-GGCGCGGggCGCCcucGGCGggcucggCGCa -3'
miRNA:   3'- -CGGCaCCGCGCCgaGCGG---UUGUa------GUG- -5'
29540 5' -58.5 NC_006151.1 + 3425 0.69 0.591636
Target:  5'- cGCCGgccgGGaCGCGGCggaaGCCGcCGUCGg -3'
miRNA:   3'- -CGGCa---CC-GCGCCGag--CGGUuGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 3941 0.69 0.591636
Target:  5'- gGCCG-GGCGCgGGCUCcgcggGCCcgGGCcgCGCg -3'
miRNA:   3'- -CGGCaCCGCG-CCGAG-----CGG--UUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 4220 0.68 0.702484
Target:  5'- gGCCGgGGCGCgGGCgggCGCgGGCAgccggaGCg -3'
miRNA:   3'- -CGGCaCCGCG-CCGa--GCGgUUGUag----UG- -5'
29540 5' -58.5 NC_006151.1 + 4279 0.66 0.788402
Target:  5'- cGCCGcGGCaggccaggacGCaGGCgucCGCCAGC-UCGCg -3'
miRNA:   3'- -CGGCaCCG----------CG-CCGa--GCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 4793 0.69 0.639148
Target:  5'- gGCCGcGGCGCGGUagcgggccgcggccUgGCgGACGUCGu -3'
miRNA:   3'- -CGGCaCCGCGCCG--------------AgCGgUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 5081 0.71 0.483995
Target:  5'- gGCCGcggGGcCGCGGCgggCGCCGGCGgagACg -3'
miRNA:   3'- -CGGCa--CC-GCGCCGa--GCGGUUGUag-UG- -5'
29540 5' -58.5 NC_006151.1 + 5337 0.66 0.785682
Target:  5'- gGCCGcGGCGgagggcgcccucucCGGCgcggCGCCGGCGggGCu -3'
miRNA:   3'- -CGGCaCCGC--------------GCCGa---GCGGUUGUagUG- -5'
29540 5' -58.5 NC_006151.1 + 5551 0.66 0.806206
Target:  5'- cGCgGcGGCG-GGCUCGUCgAGCAggggcUCGCg -3'
miRNA:   3'- -CGgCaCCGCgCCGAGCGG-UUGU-----AGUG- -5'
29540 5' -58.5 NC_006151.1 + 6291 0.67 0.731966
Target:  5'- gGCCGcGGCgGCGGC-CGCCAGgAgcUgGCu -3'
miRNA:   3'- -CGGCaCCG-CGCCGaGCGGUUgU--AgUG- -5'
29540 5' -58.5 NC_006151.1 + 10490 0.7 0.57157
Target:  5'- aGCCGcccGGCGCGcGCcCGCCGccGCAggCGCg -3'
miRNA:   3'- -CGGCa--CCGCGC-CGaGCGGU--UGUa-GUG- -5'
29540 5' -58.5 NC_006151.1 + 10999 0.7 0.57157
Target:  5'- gGCCGggGGCccCGGCUCGCCcGCccgcUCGCu -3'
miRNA:   3'- -CGGCa-CCGc-GCCGAGCGGuUGu---AGUG- -5'
29540 5' -58.5 NC_006151.1 + 13187 0.67 0.731966
Target:  5'- gGCCGUcucggGGCccGCGGCgcCGCCAAC-UCGa -3'
miRNA:   3'- -CGGCA-----CCG--CGCCGa-GCGGUUGuAGUg -5'
29540 5' -58.5 NC_006151.1 + 17471 0.7 0.581585
Target:  5'- uGCCGcGGCGUGucCUCGUCGGCggCGCg -3'
miRNA:   3'- -CGGCaCCGCGCc-GAGCGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 18676 0.72 0.420557
Target:  5'- gGCCGUacggguuccacgGGCGCgcgGGCggCGCCGGCGUCGu -3'
miRNA:   3'- -CGGCA------------CCGCG---CCGa-GCGGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 18990 0.66 0.779289
Target:  5'- aGgCGUacGCGCGGCgCGCCAccaGCcgCGCg -3'
miRNA:   3'- -CgGCAc-CGCGCCGaGCGGU---UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 19271 0.66 0.779289
Target:  5'- gGCuCGUGGCGCgcggGGCccaccgggGCCAGCggCGCg -3'
miRNA:   3'- -CG-GCACCGCG----CCGag------CGGUUGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 19383 0.69 0.642184
Target:  5'- uGUCGUugGGCGUGGCcCGCCGGacgGUCAg -3'
miRNA:   3'- -CGGCA--CCGCGCCGaGCGGUUg--UAGUg -5'
29540 5' -58.5 NC_006151.1 + 19728 0.66 0.806206
Target:  5'- aGCCGaagcccGCGCGGCggucgUCGCCGuugAgGUCGCc -3'
miRNA:   3'- -CGGCac----CGCGCCG-----AGCGGU---UgUAGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.