miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29540 5' -58.5 NC_006151.1 + 96599 0.81 0.128728
Target:  5'- cGCCG-GGCGCgGGCgCGCCGACGUCGu -3'
miRNA:   3'- -CGGCaCCGCG-CCGaGCGGUUGUAGUg -5'
29540 5' -58.5 NC_006151.1 + 81566 0.78 0.212555
Target:  5'- gGCCGUGGUGCGGagcaggguCUCGCgcGCGUCGCc -3'
miRNA:   3'- -CGGCACCGCGCC--------GAGCGguUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 84330 0.77 0.223132
Target:  5'- aCCGU-GCGCGGcCUCGCCGaguACGUCGCc -3'
miRNA:   3'- cGGCAcCGCGCC-GAGCGGU---UGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 58652 0.77 0.234154
Target:  5'- cGCCGggagGGCGCGGCgcagggcCGCCAugAcCGCg -3'
miRNA:   3'- -CGGCa---CCGCGCCGa------GCGGUugUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 113133 0.76 0.25154
Target:  5'- cGCCG-GGCcCGGCUaCGCCGACcUCGCc -3'
miRNA:   3'- -CGGCaCCGcGCCGA-GCGGUUGuAGUG- -5'
29540 5' -58.5 NC_006151.1 + 104648 0.76 0.257568
Target:  5'- -aCGUGcGCGCGGC-CGCCGACGcggCGCg -3'
miRNA:   3'- cgGCAC-CGCGCCGaGCGGUUGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 38279 0.76 0.269976
Target:  5'- gGCCGcGGCcCGGCUCGCCGaggccGCcgCGCg -3'
miRNA:   3'- -CGGCaCCGcGCCGAGCGGU-----UGuaGUG- -5'
29540 5' -58.5 NC_006151.1 + 64558 0.76 0.276359
Target:  5'- gGCCGUGGCGCGccaGCUCGaCgAGCAggucgugCACg -3'
miRNA:   3'- -CGGCACCGCGC---CGAGC-GgUUGUa------GUG- -5'
29540 5' -58.5 NC_006151.1 + 58439 0.75 0.310083
Target:  5'- cGCCucgGUGGCGUGcGCgCGCgCGGCGUCGCg -3'
miRNA:   3'- -CGG---CACCGCGC-CGaGCG-GUUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 99086 0.75 0.324425
Target:  5'- aCCGUGGCGCGGC--GCCuGCG-CACg -3'
miRNA:   3'- cGGCACCGCGCCGagCGGuUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 117268 0.74 0.331779
Target:  5'- gGCCGc-GCGCGGCcgcCGCCGACAgcgCGCg -3'
miRNA:   3'- -CGGCacCGCGCCGa--GCGGUUGUa--GUG- -5'
29540 5' -58.5 NC_006151.1 + 87616 0.74 0.331779
Target:  5'- cGCCGUGGCcugccagcGCGGC--GCCGACAUCu- -3'
miRNA:   3'- -CGGCACCG--------CGCCGagCGGUUGUAGug -5'
29540 5' -58.5 NC_006151.1 + 123903 0.74 0.331779
Target:  5'- cGCCGUgcGGCGCGGCg-GCCGugA-CGCg -3'
miRNA:   3'- -CGGCA--CCGCGCCGagCGGUugUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 75135 0.74 0.362408
Target:  5'- gGCCGgcGGCGCGGCccagCGCgGGCG-CACg -3'
miRNA:   3'- -CGGCa-CCGCGCCGa---GCGgUUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 123030 0.73 0.378442
Target:  5'- cGCCGUGGCGUgGGCggaccUGCCGGCcgCGg -3'
miRNA:   3'- -CGGCACCGCG-CCGa----GCGGUUGuaGUg -5'
29540 5' -58.5 NC_006151.1 + 57528 0.73 0.378442
Target:  5'- gGCCGccuccGGCGCGGC-CGCgGGCAcgUCGCc -3'
miRNA:   3'- -CGGCa----CCGCGCCGaGCGgUUGU--AGUG- -5'
29540 5' -58.5 NC_006151.1 + 104378 0.73 0.378442
Target:  5'- aGCCGcucuCGCGGCUgGCCcGCAUCGCc -3'
miRNA:   3'- -CGGCacc-GCGCCGAgCGGuUGUAGUG- -5'
29540 5' -58.5 NC_006151.1 + 63584 0.73 0.386636
Target:  5'- uGgCGUGGCGCgGGUUCGCgAACAcgggCACc -3'
miRNA:   3'- -CgGCACCGCG-CCGAGCGgUUGUa---GUG- -5'
29540 5' -58.5 NC_006151.1 + 96216 0.73 0.386636
Target:  5'- cGCCGUGGCgGCGGC-CGCggcgaGGCG-CACa -3'
miRNA:   3'- -CGGCACCG-CGCCGaGCGg----UUGUaGUG- -5'
29540 5' -58.5 NC_006151.1 + 106200 0.73 0.386636
Target:  5'- aGCCGgcGGUGCGGCUCGCCcuccccgaccugAugGUgGCc -3'
miRNA:   3'- -CGGCa-CCGCGCCGAGCGG------------UugUAgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.