miRNA display CGI


Results 41 - 60 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 133184 0.66 0.885093
Target:  5'- cACGCGUcccACGGCcGCGCagaagauGCGCUUGUUg -3'
miRNA:   3'- cUGCGCA---UGUCGuUGUG-------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 92217 0.66 0.885093
Target:  5'- -cCGCGcUGgAGCAcgaugcuGCACGCGCC-GCg -3'
miRNA:   3'- cuGCGC-AUgUCGU-------UGUGCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 25111 0.66 0.885093
Target:  5'- -cUGCGUGCgAGCGcugggcguggACGCGCGacaacccCCUGCUg -3'
miRNA:   3'- cuGCGCAUG-UCGU----------UGUGCGC-------GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 120311 0.66 0.884396
Target:  5'- cGACGgGcucggGCAGCcucucggacgccGCGCGCGCCcgcgugGCCg -3'
miRNA:   3'- -CUGCgCa----UGUCGu-----------UGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 87252 0.66 0.884396
Target:  5'- gGGCGCuguacccgccgauGUACgccccccagccggGGCuGCACGCGCC-GCCc -3'
miRNA:   3'- -CUGCG-------------CAUG-------------UCGuUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 81521 0.66 0.883697
Target:  5'- -cCGCGUgagcucggcggccGCGGCGGCGCGCuCCgcggugcacaugGCCg -3'
miRNA:   3'- cuGCGCA-------------UGUCGUUGUGCGcGGa-----------CGG- -5'
29543 3' -56.1 NC_006151.1 + 102810 0.66 0.878742
Target:  5'- uGCGCGgcgcGCAGU-ACA-GCGCCaagGCCa -3'
miRNA:   3'- cUGCGCa---UGUCGuUGUgCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 37446 0.66 0.878742
Target:  5'- gGACGaCGUccgccaggccGCGGCccgcuAC-CGCGCCgcgGCCg -3'
miRNA:   3'- -CUGC-GCA----------UGUCGu----UGuGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 49121 0.66 0.878742
Target:  5'- gGGCGaCGUACccgacGCuGCcCGCGCCcGCCc -3'
miRNA:   3'- -CUGC-GCAUGu----CGuUGuGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 75392 0.66 0.878742
Target:  5'- cGGCGCGggGCGGguGCGUGCGCggGUCc -3'
miRNA:   3'- -CUGCGCa-UGUCguUGUGCGCGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 78119 0.66 0.878742
Target:  5'- gGACGCcauccUGCGGCGggccGCGgGCGCCUcggacgacGCCu -3'
miRNA:   3'- -CUGCGc----AUGUCGU----UGUgCGCGGA--------CGG- -5'
29543 3' -56.1 NC_006151.1 + 106848 0.66 0.878742
Target:  5'- gGACGUGUACucGCccGGCuCGgGCCUGaCCc -3'
miRNA:   3'- -CUGCGCAUGu-CG--UUGuGCgCGGAC-GG- -5'
29543 3' -56.1 NC_006151.1 + 129866 0.66 0.878742
Target:  5'- aGGCcCGU--GGCGuCGCGCGCCgccGCCa -3'
miRNA:   3'- -CUGcGCAugUCGUuGUGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 20141 0.66 0.878742
Target:  5'- gGGCGCcgcgGgGGCGGCGCGUggaccGCCggGCCg -3'
miRNA:   3'- -CUGCGca--UgUCGUUGUGCG-----CGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 95312 0.66 0.878742
Target:  5'- cGGCGCaGcGCGGCAaagucgaagGCGC-CGCCcGCCa -3'
miRNA:   3'- -CUGCG-CaUGUCGU---------UGUGcGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 107036 0.66 0.878742
Target:  5'- cGGCGCGgccccuggcCGGCgAGC-CG-GCCUGCCu -3'
miRNA:   3'- -CUGCGCau-------GUCG-UUGuGCgCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 69782 0.66 0.878026
Target:  5'- cGCGCGUaguuggcgaacugGCGGCAcagGCGCuccagGCGCUcGCCg -3'
miRNA:   3'- cUGCGCA-------------UGUCGU---UGUG-----CGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 118077 0.66 0.876585
Target:  5'- uACGUGUACgugacgccgaucgaGGCGcuGCGcCGCGaCCUGCUg -3'
miRNA:   3'- cUGCGCAUG--------------UCGU--UGU-GCGC-GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 76667 0.66 0.875862
Target:  5'- cGCGUGUGCgcggucgcuggggAGCAggggggagaguggcGCggGCGCGCCgcgGCCg -3'
miRNA:   3'- cUGCGCAUG-------------UCGU--------------UG--UGCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 65804 0.66 0.874408
Target:  5'- cGGCGCGgACgugccgcgguggaugGGCGGC-CGCGCCagcgcgGCCc -3'
miRNA:   3'- -CUGCGCaUG---------------UCGUUGuGCGCGGa-----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.