miRNA display CGI


Results 21 - 40 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 20141 0.66 0.878742
Target:  5'- gGGCGCcgcgGgGGCGGCGCGUggaccGCCggGCCg -3'
miRNA:   3'- -CUGCGca--UgUCGUUGUGCG-----CGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 20732 0.76 0.348385
Target:  5'- gGGCGCGagacgaACAGCAGCcgGCGCGCCU-CCa -3'
miRNA:   3'- -CUGCGCa-----UGUCGUUG--UGCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 20773 0.73 0.507693
Target:  5'- gGACGCGcgccggGCgAGCGGCuCGCGCUUGCg -3'
miRNA:   3'- -CUGCGCa-----UG-UCGUUGuGCGCGGACGg -5'
29543 3' -56.1 NC_006151.1 + 20868 0.7 0.710611
Target:  5'- cGCGCGUGUAGCAG-GCGCGCUUGg- -3'
miRNA:   3'- cUGCGCAUGUCGUUgUGCGCGGACgg -5'
29543 3' -56.1 NC_006151.1 + 20897 0.74 0.459981
Target:  5'- aGGCGCa-GCAGCucCACGCGCCcGCUg -3'
miRNA:   3'- -CUGCGcaUGUCGuuGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 21599 0.69 0.720614
Target:  5'- --gGCGUACGGCGugGCGgCGgCguagGCCc -3'
miRNA:   3'- cugCGCAUGUCGUugUGC-GCgGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 21970 0.68 0.806066
Target:  5'- cGGCGUgGUGCGGCGccgGCA-GCGCCcaaagaucUGCCu -3'
miRNA:   3'- -CUGCG-CAUGUCGU---UGUgCGCGG--------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 22288 0.67 0.856296
Target:  5'- cGGCGCGggcACGGCGuccACGucCGCGCCgagcGUCg -3'
miRNA:   3'- -CUGCGCa--UGUCGU---UGU--GCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 22843 0.67 0.861705
Target:  5'- aGCGCGcUGCccaggaagcccaggAGCAGgGCGgGgCUGCCg -3'
miRNA:   3'- cUGCGC-AUG--------------UCGUUgUGCgCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 24732 0.68 0.805176
Target:  5'- -cCGaaaGUGCGGCAggaccagGCACGuCGCCggGCCc -3'
miRNA:   3'- cuGCg--CAUGUCGU-------UGUGC-GCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 24811 0.73 0.497974
Target:  5'- aGGCGC-UGCAGCAGCAUGC-CCU-CCa -3'
miRNA:   3'- -CUGCGcAUGUCGUUGUGCGcGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 25111 0.66 0.885093
Target:  5'- -cUGCGUGCgAGCGcugggcguggACGCGCGacaacccCCUGCUg -3'
miRNA:   3'- cuGCGCAUG-UCGU----------UGUGCGC-------GGACGG- -5'
29543 3' -56.1 NC_006151.1 + 25312 0.69 0.759765
Target:  5'- aACGgGUGCGGUGugAaugaGCGCCgggacgGCCg -3'
miRNA:   3'- cUGCgCAUGUCGUugUg---CGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 26977 0.67 0.832007
Target:  5'- aGCGCGcugcGCAGCGGgGCGC-UCUGCUc -3'
miRNA:   3'- cUGCGCa---UGUCGUUgUGCGcGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 27086 0.72 0.598095
Target:  5'- gGGCGCG-GC-GCAGgGCGCGCgUGUCg -3'
miRNA:   3'- -CUGCGCaUGuCGUUgUGCGCGgACGG- -5'
29543 3' -56.1 NC_006151.1 + 28169 0.68 0.806066
Target:  5'- cGGCGuCGUugGgGCGGCGaGUGCCgucgGCCg -3'
miRNA:   3'- -CUGC-GCAugU-CGUUGUgCGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 30610 0.67 0.856296
Target:  5'- aACGCGgGCGGuCGGCGUGCGCgCUGUg -3'
miRNA:   3'- cUGCGCaUGUC-GUUGUGCGCG-GACGg -5'
29543 3' -56.1 NC_006151.1 + 31755 0.78 0.270104
Target:  5'- gGACGCGccUGCGGCGgcggGCGCGCGCCggGCg -3'
miRNA:   3'- -CUGCGC--AUGUCGU----UGUGCGCGGa-CGg -5'
29543 3' -56.1 NC_006151.1 + 31958 0.67 0.832007
Target:  5'- uGACGcCGgggAC-GCGGgACGUGCCcGCCg -3'
miRNA:   3'- -CUGC-GCa--UGuCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 35089 0.7 0.680234
Target:  5'- -uCGCGUGCcG-AGCAUGCGCCUcgcGCCc -3'
miRNA:   3'- cuGCGCAUGuCgUUGUGCGCGGA---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.