miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 678 0.7 0.680234
Target:  5'- -cCGCGgaucGCAuCGGCGCGCcgaGCCUGCCc -3'
miRNA:   3'- cuGCGCa---UGUcGUUGUGCG---CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 2289 0.67 0.823534
Target:  5'- gGGCGCccGCGGCGGCGacgGCGCCcgggGUCa -3'
miRNA:   3'- -CUGCGcaUGUCGUUGUg--CGCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 3074 0.66 0.871475
Target:  5'- aGAgGCGguggGCgaaGGCGGCGagcaGCGCCgagagGCCg -3'
miRNA:   3'- -CUgCGCa---UG---UCGUUGUg---CGCGGa----CGG- -5'
29543 3' -56.1 NC_006151.1 + 3271 0.69 0.750125
Target:  5'- cGGCGC--GCGGCGAUGUGCGCCagggcgGCCg -3'
miRNA:   3'- -CUGCGcaUGUCGUUGUGCGCGGa-----CGG- -5'
29543 3' -56.1 NC_006151.1 + 4085 0.71 0.636125
Target:  5'- cGGCGCcacgGUGCgGGCGACGagggcgacagagucCGCgGCCUGCCg -3'
miRNA:   3'- -CUGCG----CAUG-UCGUUGU--------------GCG-CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 4276 0.67 0.863991
Target:  5'- gGACGCc-GCGGCAggccaggacGCAgGCGUCcGCCa -3'
miRNA:   3'- -CUGCGcaUGUCGU---------UGUgCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 5083 0.67 0.848396
Target:  5'- -cCGCGggGCcGCGGCGgGCGCCgGCg -3'
miRNA:   3'- cuGCGCa-UGuCGUUGUgCGCGGaCGg -5'
29543 3' -56.1 NC_006151.1 + 7060 0.67 0.863991
Target:  5'- cGCGCGga-GGCGucuccCGCGCGCCucugauuugcaUGCCc -3'
miRNA:   3'- cUGCGCaugUCGUu----GUGCGCGG-----------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 10202 0.69 0.740381
Target:  5'- cGGCGCGgGCGGCGGCugcagAgGCGgCUGCg -3'
miRNA:   3'- -CUGCGCaUGUCGUUG-----UgCGCgGACGg -5'
29543 3' -56.1 NC_006151.1 + 10465 0.73 0.501852
Target:  5'- gGACGCGgcgGCGGUgaaGgaggagagccgcccgGCGCGCGCCcGCCg -3'
miRNA:   3'- -CUGCGCa--UGUCG---U---------------UGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 10517 0.68 0.769291
Target:  5'- aGGCGCGUcccCGGC-GCGgGCGCCUcuccacGCCc -3'
miRNA:   3'- -CUGCGCAu--GUCGuUGUgCGCGGA------CGG- -5'
29543 3' -56.1 NC_006151.1 + 10644 0.66 0.901124
Target:  5'- cGGCGCGgcauccccgcccagGCGGCGggggagcGCggaGCGCGCC-GCCc -3'
miRNA:   3'- -CUGCGCa-------------UGUCGU-------UG---UGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 15157 0.74 0.44157
Target:  5'- cGACGUG-ACgGGCGACACGCGCgccCUGCg -3'
miRNA:   3'- -CUGCGCaUG-UCGUUGUGCGCG---GACGg -5'
29543 3' -56.1 NC_006151.1 + 15897 0.68 0.814884
Target:  5'- gGACGCGcGCccCGACGCG-GCCcGCCg -3'
miRNA:   3'- -CUGCGCaUGucGUUGUGCgCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 16870 0.66 0.871475
Target:  5'- aGAUG-GUACAucGCGGgGCGCGCUcgcguccguUGCCg -3'
miRNA:   3'- -CUGCgCAUGU--CGUUgUGCGCGG---------ACGG- -5'
29543 3' -56.1 NC_006151.1 + 17402 0.71 0.639212
Target:  5'- gGGCGCGUggcgcGCGGCAGCAgGgccaGCgaGCCg -3'
miRNA:   3'- -CUGCGCA-----UGUCGUUGUgCg---CGgaCGG- -5'
29543 3' -56.1 NC_006151.1 + 17476 0.7 0.690412
Target:  5'- cGGCGUGUccucguCGGCGGCGCGC-CgCUGCUg -3'
miRNA:   3'- -CUGCGCAu-----GUCGUUGUGCGcG-GACGG- -5'
29543 3' -56.1 NC_006151.1 + 17930 0.74 0.478793
Target:  5'- cGACGCccaucagGCAGCGGCggcgucuccgGCGCccGCCUGCCg -3'
miRNA:   3'- -CUGCGca-----UGUCGUUG----------UGCG--CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 18988 0.73 0.488339
Target:  5'- cGAgGCGUACGcGCGGCGCGCcaCCaGCCg -3'
miRNA:   3'- -CUgCGCAUGU-CGUUGUGCGc-GGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 19280 0.67 0.864749
Target:  5'- cGCGCGgggcccaccggggcCAGCGGCGCGgGCg-GCCg -3'
miRNA:   3'- cUGCGCau------------GUCGUUGUGCgCGgaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.