miRNA display CGI


Results 1 - 20 of 456 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 3' -56.1 NC_006151.1 + 68860 0.85 0.108644
Target:  5'- cGACGCGUcCAGCAGCgccgggGCGCGCCcgGCCa -3'
miRNA:   3'- -CUGCGCAuGUCGUUG------UGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 84262 0.83 0.130545
Target:  5'- uGCGCGUGCucgaCGugACGCGCCUGCCc -3'
miRNA:   3'- cUGCGCAUGuc--GUugUGCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 64499 0.83 0.137516
Target:  5'- gGGCGCGgGCGGCgGGCGCGCGCC-GCCa -3'
miRNA:   3'- -CUGCGCaUGUCG-UUGUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 105379 0.81 0.191702
Target:  5'- uGGCGCuGcGCAGCGACGCcgucuacccGCGCCUGCCc -3'
miRNA:   3'- -CUGCG-CaUGUCGUUGUG---------CGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 104906 0.79 0.251369
Target:  5'- gGACGCG-GCGGCGGCGCGCGaCCgcgacgggGCCc -3'
miRNA:   3'- -CUGCGCaUGUCGUUGUGCGC-GGa-------CGG- -5'
29543 3' -56.1 NC_006151.1 + 118883 0.79 0.251369
Target:  5'- cGGCGCG-GCGGCGACGCGgcCGCCggcgGCCu -3'
miRNA:   3'- -CUGCGCaUGUCGUUGUGC--GCGGa---CGG- -5'
29543 3' -56.1 NC_006151.1 + 138556 0.79 0.257492
Target:  5'- gGGCGCGUACuacGCGACcguCGCccGCCUGCCc -3'
miRNA:   3'- -CUGCGCAUGu--CGUUGu--GCG--CGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 31755 0.78 0.270104
Target:  5'- gGACGCGccUGCGGCGgcggGCGCGCGCCggGCg -3'
miRNA:   3'- -CUGCGC--AUGUCGU----UGUGCGCGGa-CGg -5'
29543 3' -56.1 NC_006151.1 + 47520 0.78 0.283209
Target:  5'- -cCGCuaauUGCAGUAACGCGCGgCUGCCa -3'
miRNA:   3'- cuGCGc---AUGUCGUUGUGCGCgGACGG- -5'
29543 3' -56.1 NC_006151.1 + 106494 0.78 0.289949
Target:  5'- aGACGgGccaGCGGCuGGCGCGCGCCgUGCCg -3'
miRNA:   3'- -CUGCgCa--UGUCG-UUGUGCGCGG-ACGG- -5'
29543 3' -56.1 NC_006151.1 + 122451 0.78 0.296813
Target:  5'- aGGCgGCGUccacgGCGGCGGCGgGCGCCgagGCCg -3'
miRNA:   3'- -CUG-CGCA-----UGUCGUUGUgCGCGGa--CGG- -5'
29543 3' -56.1 NC_006151.1 + 115116 0.77 0.310918
Target:  5'- cGGCGCcgcCGGCGACGCGCGCgUGCg -3'
miRNA:   3'- -CUGCGcauGUCGUUGUGCGCGgACGg -5'
29543 3' -56.1 NC_006151.1 + 118316 0.77 0.310918
Target:  5'- gGACuGCGUGCccccgAGCAGCGcCGCGCCcGCCc -3'
miRNA:   3'- -CUG-CGCAUG-----UCGUUGU-GCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 123184 0.77 0.310918
Target:  5'- aACGUGUACGGCGACGCGCuG-CUGCa -3'
miRNA:   3'- cUGCGCAUGUCGUUGUGCG-CgGACGg -5'
29543 3' -56.1 NC_006151.1 + 77102 0.77 0.325527
Target:  5'- aGCGCGggcGCGGCgGGCGCGCGCCcacaaagGCCg -3'
miRNA:   3'- cUGCGCa--UGUCG-UUGUGCGCGGa------CGG- -5'
29543 3' -56.1 NC_006151.1 + 117380 0.77 0.34064
Target:  5'- cACGUGcACGGC--CACGCGCUUGCCg -3'
miRNA:   3'- cUGCGCaUGUCGuuGUGCGCGGACGG- -5'
29543 3' -56.1 NC_006151.1 + 68773 0.77 0.34064
Target:  5'- uGGCGCGcGCGGCGAgGUGCGCC-GCCg -3'
miRNA:   3'- -CUGCGCaUGUCGUUgUGCGCGGaCGG- -5'
29543 3' -56.1 NC_006151.1 + 53785 0.76 0.348385
Target:  5'- aGACGUucuggGCGGCGACGCGCGUCgaGCCc -3'
miRNA:   3'- -CUGCGca---UGUCGUUGUGCGCGGa-CGG- -5'
29543 3' -56.1 NC_006151.1 + 20732 0.76 0.348385
Target:  5'- gGGCGCGagacgaACAGCAGCcgGCGCGCCU-CCa -3'
miRNA:   3'- -CUGCGCa-----UGUCGUUG--UGCGCGGAcGG- -5'
29543 3' -56.1 NC_006151.1 + 85152 0.76 0.355462
Target:  5'- -cCGCGUGCGGCAgggggccggcgccGCGgGCGCC-GCCg -3'
miRNA:   3'- cuGCGCAUGUCGU-------------UGUgCGCGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.