miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 113332 0.66 0.931384
Target:  5'- cCCGUgCUGgCGCuggcGCUGaaGCaCGUGCGCg -3'
miRNA:   3'- -GGCA-GAUgGUGuu--CGAC--CG-GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 116171 0.66 0.931384
Target:  5'- aCGUgaACaCGCGGaucuGCUGGCCGUcguagaugGCGCg -3'
miRNA:   3'- gGCAgaUG-GUGUU----CGACCGGUA--------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 137726 0.66 0.931384
Target:  5'- gCCGUC-GCCguACGcGgUGGCCG-GCGCc -3'
miRNA:   3'- -GGCAGaUGG--UGUuCgACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 68188 0.66 0.930865
Target:  5'- gCGUCguugagcaggACCACGacguggaAGC-GGCCcUGCGCc -3'
miRNA:   3'- gGCAGa---------UGGUGU-------UCGaCCGGuACGCG- -5'
29543 5' -54.5 NC_006151.1 + 82119 0.66 0.92982
Target:  5'- gCGUgUAcacguggaagcggcCCGCGGGCgGGCCcgGCGg -3'
miRNA:   3'- gGCAgAU--------------GGUGUUCGaCCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 123817 0.66 0.92982
Target:  5'- aCGUCUuuggccugcuccacACCACGcugcAGCUGcgcggggcGCCGUcGCGCu -3'
miRNA:   3'- gGCAGA--------------UGGUGU----UCGAC--------CGGUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 137656 0.66 0.926086
Target:  5'- cCCGUCccgGCgGaCGAGCgcccGCCGUGCGg -3'
miRNA:   3'- -GGCAGa--UGgU-GUUCGac--CGGUACGCg -5'
29543 5' -54.5 NC_006151.1 + 132843 0.66 0.926086
Target:  5'- aCGgCcACCACGGGCggccGGCCcgGgGCc -3'
miRNA:   3'- gGCaGaUGGUGUUCGa---CCGGuaCgCG- -5'
29543 5' -54.5 NC_006151.1 + 128533 0.66 0.926086
Target:  5'- cCCGag-GCCAC-GGCgGGCCcgccgGCGCg -3'
miRNA:   3'- -GGCagaUGGUGuUCGaCCGGua---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 74198 0.66 0.926086
Target:  5'- aUCGUCUG-CACcAGCUGGUacacgcgguCGUaGCGCa -3'
miRNA:   3'- -GGCAGAUgGUGuUCGACCG---------GUA-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 119447 0.66 0.926086
Target:  5'- uUCGUggGCCGC-GGCgacguggacGCCGUGCGCu -3'
miRNA:   3'- -GGCAgaUGGUGuUCGac-------CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 58403 0.66 0.926086
Target:  5'- gCCGgccaUGgCGCGcAGCUGGgCGUGCGg -3'
miRNA:   3'- -GGCag--AUgGUGU-UCGACCgGUACGCg -5'
29543 5' -54.5 NC_006151.1 + 125304 0.66 0.926086
Target:  5'- gCGcaUC-ACCACGGGCUcGGCgGaguuUGCGCg -3'
miRNA:   3'- gGC--AGaUGGUGUUCGA-CCGgU----ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 64184 0.66 0.925543
Target:  5'- cCCGUC-GCCGCccgcgaucgccccGGGCaGGUCcgGCGUg -3'
miRNA:   3'- -GGCAGaUGGUG-------------UUCGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 78438 0.67 0.920543
Target:  5'- gCCGUCaACCGCGuGCUGcGCgAgGCGa -3'
miRNA:   3'- -GGCAGaUGGUGUuCGAC-CGgUaCGCg -5'
29543 5' -54.5 NC_006151.1 + 129212 0.67 0.920543
Target:  5'- cCCGgggGCCGCcagcaggcAGCUGGCgCGggUGCGCc -3'
miRNA:   3'- -GGCagaUGGUGu-------UCGACCG-GU--ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 102217 0.67 0.920543
Target:  5'- cCCG-CacCCACGGGgaGGCgcCGUGCGCc -3'
miRNA:   3'- -GGCaGauGGUGUUCgaCCG--GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 86234 0.67 0.920543
Target:  5'- cCCGcgCUGCgACAucggcgccguGCUGGCCGUGgucgacgacgacCGCg -3'
miRNA:   3'- -GGCa-GAUGgUGUu---------CGACCGGUAC------------GCG- -5'
29543 5' -54.5 NC_006151.1 + 75854 0.67 0.920543
Target:  5'- cCCGUCgacggggcGCCccuGCGuguccGCgugGGUCAUGCGCg -3'
miRNA:   3'- -GGCAGa-------UGG---UGUu----CGa--CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 37164 0.67 0.920543
Target:  5'- aCCGUCU-CCGCcGGCgcccgccgcGGCCccGCGg -3'
miRNA:   3'- -GGCAGAuGGUGuUCGa--------CCGGuaCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.