miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 39479 0.76 0.452564
Target:  5'- cCCGggUGCCGCGAGCUccgcgcGGCCGUGCu- -3'
miRNA:   3'- -GGCagAUGGUGUUCGA------CCGGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 39970 0.77 0.416283
Target:  5'- gCCGUCgccGCCGCGGGCgccccgccGGCCGUGCu- -3'
miRNA:   3'- -GGCAGa--UGGUGUUCGa-------CCGGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 45524 0.66 0.950563
Target:  5'- gCCGUCgacccACCGCGGGagGGCCcgcuucccacgacgGCGCg -3'
miRNA:   3'- -GGCAGa----UGGUGUUCgaCCGGua------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 45842 0.67 0.908725
Target:  5'- cCCaUCUGCCugGAcgucGC-GGCCAccgagGCGCa -3'
miRNA:   3'- -GGcAGAUGGugUU----CGaCCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 49035 0.72 0.671448
Target:  5'- gCCGggccaggcCCACGGGCUGGCCuucagcguccgGCGCg -3'
miRNA:   3'- -GGCagau----GGUGUUCGACCGGua---------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 49228 0.67 0.919975
Target:  5'- cCCGgCUcCCACGccccgcucGGCUGGgcgcggcUCGUGCGCg -3'
miRNA:   3'- -GGCaGAuGGUGU--------UCGACC-------GGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 49474 0.67 0.913569
Target:  5'- cCCGUCga-CugGAGCguggacugagucGGgCGUGCGCg -3'
miRNA:   3'- -GGCAGaugGugUUCGa-----------CCgGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 50639 0.66 0.941248
Target:  5'- cUCGgCgacgGCCGCGGGCggacccGaGUCGUGCGCg -3'
miRNA:   3'- -GGCaGa---UGGUGUUCGa-----C-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 54082 0.67 0.914755
Target:  5'- aCCcUCUGCgGCGgcGGCggcGGCCAUGUcgGCu -3'
miRNA:   3'- -GGcAGAUGgUGU--UCGa--CCGGUACG--CG- -5'
29543 5' -54.5 NC_006151.1 + 55060 0.66 0.936438
Target:  5'- cUCGgCgaggACCcgGCGGGCUcGGCCGcgGCGCg -3'
miRNA:   3'- -GGCaGa---UGG--UGUUCGA-CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 55401 0.72 0.652871
Target:  5'- gCGcCUG-CGCGAGCaGGCCcUGCGCg -3'
miRNA:   3'- gGCaGAUgGUGUUCGaCCGGuACGCG- -5'
29543 5' -54.5 NC_006151.1 + 56164 0.74 0.570305
Target:  5'- gCCGcCgaggACCGCGugcucucGCUGGCCGUGcCGCc -3'
miRNA:   3'- -GGCaGa---UGGUGUu------CGACCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 56199 0.73 0.590823
Target:  5'- nCCGguggcgCUGCCGCAccgcCUGGCCcugGUGCGCc -3'
miRNA:   3'- -GGCa-----GAUGGUGUuc--GACCGG---UACGCG- -5'
29543 5' -54.5 NC_006151.1 + 56656 0.68 0.889195
Target:  5'- gCCGUgUACCGCuGGUggacgacgGcGCCGcGCGCg -3'
miRNA:   3'- -GGCAgAUGGUGuUCGa-------C-CGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 57699 0.68 0.859938
Target:  5'- cCCGcCgaagaagGCCACGAGCgccGGCUugaccGCGCg -3'
miRNA:   3'- -GGCaGa------UGGUGUUCGa--CCGGua---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 57848 0.68 0.867583
Target:  5'- aCGggugCU-CCACGGcGCUGGUCGcGCGCc -3'
miRNA:   3'- gGCa---GAuGGUGUU-CGACCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 58403 0.66 0.926086
Target:  5'- gCCGgccaUGgCGCGcAGCUGGgCGUGCGg -3'
miRNA:   3'- -GGCag--AUgGUGU-UCGACCgGUACGCg -5'
29543 5' -54.5 NC_006151.1 + 58617 0.67 0.901812
Target:  5'- uCCGUCUcgaAgCGCAgcGGCUcguagaaGGCCA-GCGCc -3'
miRNA:   3'- -GGCAGA---UgGUGU--UCGA-------CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 58829 0.68 0.875011
Target:  5'- cCCGUCgcgGCacaGCAGGUgcGCCA-GCGCg -3'
miRNA:   3'- -GGCAGa--UGg--UGUUCGacCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 58934 0.67 0.914755
Target:  5'- gCCGUCauagcGCCGCaAAGUccacGGCCcccucgGUGCGCg -3'
miRNA:   3'- -GGCAGa----UGGUG-UUCGa---CCGG------UACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.