miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 2164 0.66 0.941248
Target:  5'- cCCGUCcucGCCG-GGGCcGGCCccgGCGCc -3'
miRNA:   3'- -GGCAGa--UGGUgUUCGaCCGGua-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 2569 0.66 0.941248
Target:  5'- gCCGUCcACgguggggagCACGcGCUGGCgGUagGCGCg -3'
miRNA:   3'- -GGCAGaUG---------GUGUuCGACCGgUA--CGCG- -5'
29543 5' -54.5 NC_006151.1 + 3912 0.66 0.931384
Target:  5'- gCCGggCUGCUcgggccagaGCGggGGCaGGCCggGCGCg -3'
miRNA:   3'- -GGCa-GAUGG---------UGU--UCGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 4185 0.67 0.913569
Target:  5'- gCCGUC-ACCuccucgagGCAGGCgggcccgagggcGGCCGggGCGCg -3'
miRNA:   3'- -GGCAGaUGG--------UGUUCGa-----------CCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 4961 0.67 0.920543
Target:  5'- cCCGUCgGCCAUGAGCgagaGGUgGUuguuguggagcgGCGCu -3'
miRNA:   3'- -GGCAGaUGGUGUUCGa---CCGgUA------------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 5696 0.68 0.867583
Target:  5'- gCCGgcgCUgcgGCCACcgcuGCUGGCUGUGCu- -3'
miRNA:   3'- -GGCa--GA---UGGUGuu--CGACCGGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 6383 0.67 0.920543
Target:  5'- --uUCUGCCugA-GCgaGGCCggGCGCc -3'
miRNA:   3'- ggcAGAUGGugUuCGa-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 7103 0.66 0.936438
Target:  5'- cCCGcUCUGCgGCcaucUUGGCCGcgGCGCg -3'
miRNA:   3'- -GGC-AGAUGgUGuuc-GACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 10506 0.67 0.914755
Target:  5'- cCCG-CcGCCGCAGGCgcgucCCcgGCGCg -3'
miRNA:   3'- -GGCaGaUGGUGUUCGacc--GGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 12744 0.74 0.539879
Target:  5'- uCCGUCUucaucGCCGCGgagGGCUGGCUcgaggccaGCGCg -3'
miRNA:   3'- -GGCAGA-----UGGUGU---UCGACCGGua------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 17066 0.69 0.835766
Target:  5'- uCCGUCaGCC-CGGGCcgccgccgGGUCAgGCGCg -3'
miRNA:   3'- -GGCAGaUGGuGUUCGa-------CCGGUaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 17102 0.69 0.835766
Target:  5'- cCCGUCggggcGCCGgGGGCUccggcGGCgGUGCuGCg -3'
miRNA:   3'- -GGCAGa----UGGUgUUCGA-----CCGgUACG-CG- -5'
29543 5' -54.5 NC_006151.1 + 18473 0.69 0.822164
Target:  5'- gCCGUCguaguaguCCucgugcguggGCAGGCUGGUguacaccggcgagagCAUGCGCg -3'
miRNA:   3'- -GGCAGau------GG----------UGUUCGACCG---------------GUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 21475 0.71 0.71429
Target:  5'- gCGUCgccgGCUcggGCAGGC-GGCCGggggGCGCg -3'
miRNA:   3'- gGCAGa---UGG---UGUUCGaCCGGUa---CGCG- -5'
29543 5' -54.5 NC_006151.1 + 31685 0.66 0.945816
Target:  5'- gCCGg--GCCGcCGAGCcGGCC--GCGCc -3'
miRNA:   3'- -GGCagaUGGU-GUUCGaCCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 32561 0.66 0.950144
Target:  5'- cCCGUCU-CC-CGGGCacccgcGGCCggGCGg -3'
miRNA:   3'- -GGCAGAuGGuGUUCGa-----CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 37164 0.67 0.920543
Target:  5'- aCCGUCU-CCGCcGGCgcccgccgcGGCCccGCGg -3'
miRNA:   3'- -GGCAGAuGGUGuUCGa--------CCGGuaCGCg -5'
29543 5' -54.5 NC_006151.1 + 37469 0.67 0.902453
Target:  5'- cCCG-CUACCGCGccgcGGCcgGGCCcGUGCcCg -3'
miRNA:   3'- -GGCaGAUGGUGU----UCGa-CCGG-UACGcG- -5'
29543 5' -54.5 NC_006151.1 + 37951 0.68 0.875011
Target:  5'- gCCG-CgugccCCGCGAGCUGGCgGacgccUGCGUc -3'
miRNA:   3'- -GGCaGau---GGUGUUCGACCGgU-----ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 39438 0.68 0.881506
Target:  5'- gCGUCcGCCugGacccGGCcgcccagUGcGCCGUGCGCu -3'
miRNA:   3'- gGCAGaUGGugU----UCG-------AC-CGGUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.