miRNA display CGI


Results 1 - 20 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29543 5' -54.5 NC_006151.1 + 71787 0.8 0.297349
Target:  5'- gCGggggCUGCCGCAccAGCUGGCCGagcucGCGCg -3'
miRNA:   3'- gGCa---GAUGGUGU--UCGACCGGUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 105636 0.78 0.349342
Target:  5'- gCCGcCUACCGCGAGCUGcUCAcgcUGCGCc -3'
miRNA:   3'- -GGCaGAUGGUGUUCGACcGGU---ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 64736 0.78 0.357278
Target:  5'- aCCGg--GCCACGAGCUcgagcagcggGGCCAccgUGCGCg -3'
miRNA:   3'- -GGCagaUGGUGUUCGA----------CCGGU---ACGCG- -5'
29543 5' -54.5 NC_006151.1 + 136954 0.77 0.398821
Target:  5'- gCCGUCcugcGCCGCcugcugGAGCUGGCCGccGCGCc -3'
miRNA:   3'- -GGCAGa---UGGUG------UUCGACCGGUa-CGCG- -5'
29543 5' -54.5 NC_006151.1 + 129552 0.77 0.407493
Target:  5'- gCCGUCaACCGC-AGCUGGCgCAUGacgGCg -3'
miRNA:   3'- -GGCAGaUGGUGuUCGACCG-GUACg--CG- -5'
29543 5' -54.5 NC_006151.1 + 39970 0.77 0.416283
Target:  5'- gCCGUCgccGCCGCGGGCgccccgccGGCCGUGCu- -3'
miRNA:   3'- -GGCAGa--UGGUGUUCGa-------CCGGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 39479 0.76 0.452564
Target:  5'- cCCGggUGCCGCGAGCUccgcgcGGCCGUGCu- -3'
miRNA:   3'- -GGCagAUGGUGUUCGA------CCGGUACGcg -5'
29543 5' -54.5 NC_006151.1 + 71076 0.75 0.497296
Target:  5'- -gGUCUucuaccaccacggcGCCGCGGGCgcggGcGCCGUGCGCu -3'
miRNA:   3'- ggCAGA--------------UGGUGUUCGa---C-CGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 98805 0.75 0.50022
Target:  5'- aCUGggcgCUGCCGCuGGCguUGGCgGUGCGCc -3'
miRNA:   3'- -GGCa---GAUGGUGuUCG--ACCGgUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 135899 0.75 0.510021
Target:  5'- uUCGUCgccGCCGCGaccccGGC-GGUCGUGCGCg -3'
miRNA:   3'- -GGCAGa--UGGUGU-----UCGaCCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 12744 0.74 0.539879
Target:  5'- uCCGUCUucaucGCCGCGgagGGCUGGCUcgaggccaGCGCg -3'
miRNA:   3'- -GGCAGA-----UGGUGU---UCGACCGGua------CGCG- -5'
29543 5' -54.5 NC_006151.1 + 82385 0.74 0.567241
Target:  5'- gCGUCgaagGCCACGAGCUccgcgcccgagggcGGCCccgagagGCGCg -3'
miRNA:   3'- gGCAGa---UGGUGUUCGA--------------CCGGua-----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 97161 0.74 0.570305
Target:  5'- aCCGa--GCCGCAGcGCUcGGCCcgGCGCa -3'
miRNA:   3'- -GGCagaUGGUGUU-CGA-CCGGuaCGCG- -5'
29543 5' -54.5 NC_006151.1 + 56164 0.74 0.570305
Target:  5'- gCCGcCgaggACCGCGugcucucGCUGGCCGUGcCGCc -3'
miRNA:   3'- -GGCaGa---UGGUGUu------CGACCGGUAC-GCG- -5'
29543 5' -54.5 NC_006151.1 + 56199 0.73 0.590823
Target:  5'- nCCGguggcgCUGCCGCAccgcCUGGCCcugGUGCGCc -3'
miRNA:   3'- -GGCa-----GAUGGUGUuc--GACCGG---UACGCG- -5'
29543 5' -54.5 NC_006151.1 + 73710 0.73 0.601131
Target:  5'- gCGUgCUggGCCACGGGCUGGCgCAccgugGCGUa -3'
miRNA:   3'- gGCA-GA--UGGUGUUCGACCG-GUa----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 59595 0.73 0.621812
Target:  5'- cCCGUCggccACCACGGGCacGGCCccggagGCGUa -3'
miRNA:   3'- -GGCAGa---UGGUGUUCGa-CCGGua----CGCG- -5'
29543 5' -54.5 NC_006151.1 + 91660 0.73 0.632168
Target:  5'- cCCGUCguggAUCACcuGCgccgGGUgGUGCGCg -3'
miRNA:   3'- -GGCAGa---UGGUGuuCGa---CCGgUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 137271 0.73 0.632168
Target:  5'- cCCGgugcCCGCGGGCacgcucgaggcGGCCAUGCGCg -3'
miRNA:   3'- -GGCagauGGUGUUCGa----------CCGGUACGCG- -5'
29543 5' -54.5 NC_006151.1 + 129598 0.73 0.642524
Target:  5'- ---aCU-CCGCGAGCgGGCaCGUGCGCa -3'
miRNA:   3'- ggcaGAuGGUGUUCGaCCG-GUACGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.