miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 18558 0.66 0.74139
Target:  5'- gGCCGCGAGGCCgCcCG-GCGgCGGGa-- -3'
miRNA:   3'- -CGGUGCUUCGG-GaGCuCGU-GCCCgag -5'
29544 3' -59.6 NC_006151.1 + 19278 0.72 0.413921
Target:  5'- gGCgCGCGggGCCCacCGgggccagcGGCGCGGGCg- -3'
miRNA:   3'- -CG-GUGCuuCGGGa-GC--------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 20811 0.69 0.56271
Target:  5'- aGCCGCgGAAGgCCUCGugguGCACgcggGGGCa- -3'
miRNA:   3'- -CGGUG-CUUCgGGAGCu---CGUG----CCCGag -5'
29544 3' -59.6 NC_006151.1 + 21496 0.69 0.552854
Target:  5'- gGCCGgGggGCg--CGGGCgucaccgggGCGGGCUCg -3'
miRNA:   3'- -CGGUgCuuCGggaGCUCG---------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 21555 0.68 0.642699
Target:  5'- gGCCugGGccucggcgAGCCCgcCGAgggccGCGCGGGgUCg -3'
miRNA:   3'- -CGGugCU--------UCGGGa-GCU-----CGUGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 22852 0.72 0.380597
Target:  5'- cCCAgGAAGCCCagGAGCA-GGGCg- -3'
miRNA:   3'- cGGUgCUUCGGGagCUCGUgCCCGag -5'
29544 3' -59.6 NC_006151.1 + 24458 0.66 0.760302
Target:  5'- gGUCGCGcgcGAGCaCCUCGGGgGCGuuGGuCUCg -3'
miRNA:   3'- -CGGUGC---UUCG-GGAGCUCgUGC--CC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 24897 0.73 0.334084
Target:  5'- gGCCACGAagacgcGGCCCUcCGAgcccgacuGCAgGGGCUg -3'
miRNA:   3'- -CGGUGCU------UCGGGA-GCU--------CGUgCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 26568 0.66 0.721139
Target:  5'- aGCC-CG-AGCCCUcuccgucCGAGCcguccucgGgGGGCUCa -3'
miRNA:   3'- -CGGuGCuUCGGGA-------GCUCG--------UgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 27361 0.67 0.652738
Target:  5'- gGCC--GggGCCCgggCGGGUcgACGGGCg- -3'
miRNA:   3'- -CGGugCuuCGGGa--GCUCG--UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 27392 0.67 0.682728
Target:  5'- aCgGCGggGa----GGGCACGGGCUCg -3'
miRNA:   3'- cGgUGCuuCgggagCUCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 28091 0.7 0.523623
Target:  5'- cGUC-CGGGcGUCCUCGAGCgggGCGcGGCUCc -3'
miRNA:   3'- -CGGuGCUU-CGGGAGCUCG---UGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 30571 0.66 0.731792
Target:  5'- cGCCGuccCGcGGCCCcgUCGGGCGCaGGGaUCg -3'
miRNA:   3'- -CGGU---GCuUCGGG--AGCUCGUG-CCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 31022 0.67 0.652738
Target:  5'- cGCCGcCGcGGCCCUCGcGGCcCGGGa-- -3'
miRNA:   3'- -CGGU-GCuUCGGGAGC-UCGuGCCCgag -5'
29544 3' -59.6 NC_006151.1 + 31232 0.68 0.632652
Target:  5'- gGCCGgccGGCCCggCGAGCgaGCGGGCg- -3'
miRNA:   3'- -CGGUgcuUCGGGa-GCUCG--UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 34599 0.67 0.652738
Target:  5'- cGCCcuCGGAGCgCgcgcCGAGCGCGaGGCg- -3'
miRNA:   3'- -CGGu-GCUUCGgGa---GCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 35149 0.67 0.691665
Target:  5'- cGCCGCGGccaagauGGCCgCagagCGGGC-CGGGCa- -3'
miRNA:   3'- -CGGUGCU-------UCGG-Ga---GCUCGuGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 35580 0.66 0.731792
Target:  5'- gGCCAUu-GGUCCgcuuaccUGGGgGCGGGCUCu -3'
miRNA:   3'- -CGGUGcuUCGGGa------GCUCgUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 36259 0.66 0.74139
Target:  5'- gGCCGCcGGGUCCcccggUCGGGCucuccaucaGGGCUCc -3'
miRNA:   3'- -CGGUGcUUCGGG-----AGCUCGug-------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 37536 0.74 0.318818
Target:  5'- -gCACGAGGCCCUCGuGCGCcucaucuacagcgGGGC-Cg -3'
miRNA:   3'- cgGUGCUUCGGGAGCuCGUG-------------CCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.