miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 714 0.69 0.572612
Target:  5'- cGUCGCaccgGggGUCCgCGGGCGgGGGCUUc -3'
miRNA:   3'- -CGGUG----CuuCGGGaGCUCGUgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 2190 0.7 0.495003
Target:  5'- cGCC-CGAGGCCCccgCGGGCcggUGGGuCUCc -3'
miRNA:   3'- -CGGuGCUUCGGGa--GCUCGu--GCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 2321 0.72 0.388759
Target:  5'- aGCaccaGCGggGCggCCUCG-GCGuCGGGCUCc -3'
miRNA:   3'- -CGg---UGCuuCG--GGAGCuCGU-GCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 2386 0.75 0.253948
Target:  5'- gGCCGgcAGGCCCUCGGGgcCGCGGaGCUCg -3'
miRNA:   3'- -CGGUgcUUCGGGAGCUC--GUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 2626 0.66 0.760302
Target:  5'- gGUC-CGggGCCC---GGCGCGGGUgcUCa -3'
miRNA:   3'- -CGGuGCuuCGGGagcUCGUGCCCG--AG- -5'
29544 3' -59.6 NC_006151.1 + 3113 0.71 0.446295
Target:  5'- cGCCGCGGcgcgGGUCCcaggcCGGGCgcggggcgcccucgGCGGGCUCg -3'
miRNA:   3'- -CGGUGCU----UCGGGa----GCUCG--------------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 3456 0.77 0.204759
Target:  5'- gGgCGCGggGUgCUCGGGCAUGGGCcCg -3'
miRNA:   3'- -CgGUGCuuCGgGAGCUCGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 3683 0.71 0.467116
Target:  5'- gGCgGCG-GGCCC-CGGGCGCGcGGCg- -3'
miRNA:   3'- -CGgUGCuUCGGGaGCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 3925 0.73 0.326749
Target:  5'- gGCCagaGCGggGgCaggcCGGGCGCGGGCUCc -3'
miRNA:   3'- -CGG---UGCuuCgGga--GCUCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 4022 0.76 0.23599
Target:  5'- gGCCGCGGcguagguccaggcGGCCUcgCGGGCGCGGGCc- -3'
miRNA:   3'- -CGGUGCU-------------UCGGGa-GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 4217 0.7 0.476324
Target:  5'- gGCgGcCGggGCgCgggCGGGCGCGGGCa- -3'
miRNA:   3'- -CGgU-GCuuCGgGa--GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 5081 0.75 0.285256
Target:  5'- gGCCGCGggGCCgCggCGGGCGCcGGCg- -3'
miRNA:   3'- -CGGUGCuuCGG-Ga-GCUCGUGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 5337 0.67 0.702534
Target:  5'- gGCCGCGGcggagggcGCCCUCuccGGCGCGGcGC-Cg -3'
miRNA:   3'- -CGGUGCUu-------CGGGAGc--UCGUGCC-CGaG- -5'
29544 3' -59.6 NC_006151.1 + 5551 0.8 0.137563
Target:  5'- cGCgGCGGcgGGCUCgUCGAGCAgGGGCUCg -3'
miRNA:   3'- -CGgUGCU--UCGGG-AGCUCGUgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 5734 0.67 0.682728
Target:  5'- cGCCGgggucCGAGGCCgCgccgCcGGCcCGGGCUCa -3'
miRNA:   3'- -CGGU-----GCUUCGG-Ga---GcUCGuGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 8304 0.74 0.312438
Target:  5'- cGCCGCGucccgccccGAGCCCcCGGggcGCGCGGGcCUCg -3'
miRNA:   3'- -CGGUGC---------UUCGGGaGCU---CGUGCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 11319 0.66 0.722111
Target:  5'- cGCCGCGAuaccGCgCgggCGAuaccGCGCGGGC-Cg -3'
miRNA:   3'- -CGGUGCUu---CGgGa--GCU----CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 13064 0.67 0.662761
Target:  5'- cGCCGCGccccuuuuUCCUCGAGaGCGGGCg- -3'
miRNA:   3'- -CGGUGCuuc-----GGGAGCUCgUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 14987 0.71 0.448982
Target:  5'- cGCUACGucgucGAGCaCCcCGAGUACGGGCc- -3'
miRNA:   3'- -CGGUGC-----UUCG-GGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 18472 0.69 0.572612
Target:  5'- cGCCGuCGuaguAGUCCUCGuGCGUGGGCa- -3'
miRNA:   3'- -CGGU-GCu---UCGGGAGCuCGUGCCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.