miRNA display CGI


Results 1 - 20 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 98343 0.85 0.063136
Target:  5'- gGCCGCGAGacGCCCgcgggCGuGCGCGGGCUCu -3'
miRNA:   3'- -CGGUGCUU--CGGGa----GCuCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 5551 0.8 0.137563
Target:  5'- cGCgGCGGcgGGCUCgUCGAGCAgGGGCUCg -3'
miRNA:   3'- -CGgUGCU--UCGGG-AGCUCGUgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 122897 0.8 0.137563
Target:  5'- aCCGCGAcGCCCUCGAGCGCcuccucgaGGGCg- -3'
miRNA:   3'- cGGUGCUuCGGGAGCUCGUG--------CCCGag -5'
29544 3' -59.6 NC_006151.1 + 89563 0.79 0.148394
Target:  5'- gGCCGCGAGGCUgaUGGGCACgcccauGGGCUCg -3'
miRNA:   3'- -CGGUGCUUCGGgaGCUCGUG------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 64478 0.79 0.15604
Target:  5'- cGCCGCGGcggggacGCCCgCGGGCGCGGGCg- -3'
miRNA:   3'- -CGGUGCUu------CGGGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 68032 0.79 0.159996
Target:  5'- uCCAgGcGGCCCgccggcgcggCGGGCACGGGCUCg -3'
miRNA:   3'- cGGUgCuUCGGGa---------GCUCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 68440 0.78 0.176735
Target:  5'- cGCgGCGGcacaGGCgCUCGAGCACGGGgUCc -3'
miRNA:   3'- -CGgUGCU----UCGgGAGCUCGUGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 98636 0.77 0.190294
Target:  5'- cGCCuucgACGAGGCCCUggCGGGCGCGcGCUCc -3'
miRNA:   3'- -CGG----UGCUUCGGGA--GCUCGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 135938 0.77 0.204759
Target:  5'- uGCCGCGggGagcCCCUCGcGGCGCGGGacgucCUCg -3'
miRNA:   3'- -CGGUGCuuC---GGGAGC-UCGUGCCC-----GAG- -5'
29544 3' -59.6 NC_006151.1 + 3456 0.77 0.204759
Target:  5'- gGgCGCGggGUgCUCGGGCAUGGGCcCg -3'
miRNA:   3'- -CgGUGCuuCGgGAGCUCGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 104928 0.77 0.204759
Target:  5'- cGCgACGggGCCCUCGAGCugGccaacCUCa -3'
miRNA:   3'- -CGgUGCuuCGGGAGCUCGugCcc---GAG- -5'
29544 3' -59.6 NC_006151.1 + 99631 0.77 0.204759
Target:  5'- cGCgCGCGAGGCCCUCaa-CACGuGGCUCg -3'
miRNA:   3'- -CG-GUGCUUCGGGAGcucGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 114076 0.77 0.204759
Target:  5'- uGCC-UGucGCUCUCGGGCAUGGGCUa -3'
miRNA:   3'- -CGGuGCuuCGGGAGCUCGUGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 40072 0.77 0.209788
Target:  5'- cCCGCGggGgCCUCGGGCGCcgGGGC-Cg -3'
miRNA:   3'- cGGUGCuuCgGGAGCUCGUG--CCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 71087 0.77 0.214924
Target:  5'- aCCACGgcGCCg-CGGGCGCGGGCg- -3'
miRNA:   3'- cGGUGCuuCGGgaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 100899 0.76 0.220166
Target:  5'- cGCCGCGGcgcgcgcgcGCCCgacgacgCGAGCGCGGGCg- -3'
miRNA:   3'- -CGGUGCUu--------CGGGa------GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 37992 0.76 0.225518
Target:  5'- uGCCGCGgcGUCCUCGAGCGCcuGCUg -3'
miRNA:   3'- -CGGUGCuuCGGGAGCUCGUGccCGAg -5'
29544 3' -59.6 NC_006151.1 + 4022 0.76 0.23599
Target:  5'- gGCCGCGGcguagguccaggcGGCCUcgCGGGCGCGGGCc- -3'
miRNA:   3'- -CGGUGCU-------------UCGGGa-GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 114677 0.76 0.248035
Target:  5'- cGCCGCGAAGgCCUCGuGCucgaaGGGCg- -3'
miRNA:   3'- -CGGUGCUUCgGGAGCuCGug---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 96589 0.76 0.248035
Target:  5'- cGgCGCGAGGCgC-CGGGCGCGGGCg- -3'
miRNA:   3'- -CgGUGCUUCGgGaGCUCGUGCCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.