miRNA display CGI


Results 61 - 80 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 128629 0.74 0.194621
Target:  5'- cCCAGGU--GGCGGaccaCGCGCGCGUCg -3'
miRNA:   3'- -GGUCCGagCCGCCgc--GCGCGCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 128784 0.74 0.194621
Target:  5'- uCCAcGGCcucggucgccUCGGCGaGCGCgGCGCGCGUggccCCg -3'
miRNA:   3'- -GGU-CCG----------AGCCGC-CGCG-CGCGCGCA----GG- -5'
29546 3' -64.1 NC_006151.1 + 132416 0.74 0.194621
Target:  5'- gCCGGaGCUUGcccucgucGCGGCGCGCcuGCGCGUgCa -3'
miRNA:   3'- -GGUC-CGAGC--------CGCCGCGCG--CGCGCAgG- -5'
29546 3' -64.1 NC_006151.1 + 73363 0.74 0.197831
Target:  5'- gCAGGUUgcccauguccgucaCGGgGGCGCGCaGCGCGgCCg -3'
miRNA:   3'- gGUCCGA--------------GCCgCCGCGCG-CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 99611 0.74 0.199221
Target:  5'- gCCGGGCU-GGCGcacaGCGcCGCGCGCGaggCCc -3'
miRNA:   3'- -GGUCCGAgCCGC----CGC-GCGCGCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 38384 0.74 0.199221
Target:  5'- gCCGGcGC-CGGCGGCG-GCGgGCGcCCc -3'
miRNA:   3'- -GGUC-CGaGCCGCCGCgCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 97275 0.74 0.199221
Target:  5'- aCGGGCagcgccUCGGCGGCGgGCGUGUugagCCg -3'
miRNA:   3'- gGUCCG------AGCCGCCGCgCGCGCGca--GG- -5'
29546 3' -64.1 NC_006151.1 + 112940 0.74 0.202497
Target:  5'- uCCAGGCcgcgacgcgcgcgaUguuuuucaccgUGGCGGaCGCGCGCGCG-CCg -3'
miRNA:   3'- -GGUCCG--------------A-----------GCCGCC-GCGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 115033 0.74 0.203915
Target:  5'- -gAGGUgCGGCaGGCGCGUGUugcuguacGCGUCCg -3'
miRNA:   3'- ggUCCGaGCCG-CCGCGCGCG--------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 98214 0.74 0.203915
Target:  5'- uCgAGuGCgCGGCGGCGCccGCGCGCGgacCCu -3'
miRNA:   3'- -GgUC-CGaGCCGCCGCG--CGCGCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 59731 0.74 0.203915
Target:  5'- aCGGGgUUGGCGaGCGCGCGCaGCaGcUCCu -3'
miRNA:   3'- gGUCCgAGCCGC-CGCGCGCG-CG-C-AGG- -5'
29546 3' -64.1 NC_006151.1 + 98644 0.74 0.203915
Target:  5'- aCgAGGCccUGGCGG-GCGCGCGC-UCCg -3'
miRNA:   3'- -GgUCCGa-GCCGCCgCGCGCGCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 22271 0.74 0.208705
Target:  5'- gCGGGCggggggaaGGuCGGCGCGgGCacgGCGUCCa -3'
miRNA:   3'- gGUCCGag------CC-GCCGCGCgCG---CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 64116 0.74 0.208705
Target:  5'- uCguGGCcCGGCGGUgGCGCGCcCGUCUc -3'
miRNA:   3'- -GguCCGaGCCGCCG-CGCGCGcGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 4328 0.73 0.213592
Target:  5'- gCCGGGCUgcgCGGCGGCGaagGCGgCGCGg-- -3'
miRNA:   3'- -GGUCCGA---GCCGCCGCg--CGC-GCGCagg -5'
29546 3' -64.1 NC_006151.1 + 96645 0.73 0.213592
Target:  5'- cUCGaGCUCGGCGGCGagggccCGgGCGaCGUCCu -3'
miRNA:   3'- -GGUcCGAGCCGCCGC------GCgCGC-GCAGG- -5'
29546 3' -64.1 NC_006151.1 + 41574 0.73 0.213592
Target:  5'- gCAGGCUCGGC-GCGC-CGaUGCGaUCCg -3'
miRNA:   3'- gGUCCGAGCCGcCGCGcGC-GCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 103898 0.73 0.213592
Target:  5'- aCCuGGCgcuggaGGUGGCGCGCGCGgcCG-CCg -3'
miRNA:   3'- -GGuCCGag----CCGCCGCGCGCGC--GCaGG- -5'
29546 3' -64.1 NC_006151.1 + 68011 0.73 0.213592
Target:  5'- aCGGGCUCGGCGGCGUccagguccagGCG-GCccgCCg -3'
miRNA:   3'- gGUCCGAGCCGCCGCG----------CGCgCGca-GG- -5'
29546 3' -64.1 NC_006151.1 + 30613 0.73 0.213592
Target:  5'- gCGGGCggUCGGCGuGCGCGCuGUGCGg-- -3'
miRNA:   3'- gGUCCG--AGCCGC-CGCGCG-CGCGCagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.