miRNA display CGI


Results 61 - 80 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 57601 0.66 0.549257
Target:  5'- aCCAGGC-CGGCcucGGcCGCggccgccucgacgGCGCGCGagaccCCg -3'
miRNA:   3'- -GGUCCGaGCCG---CC-GCG-------------CGCGCGCa----GG- -5'
29546 3' -64.1 NC_006151.1 + 131647 0.66 0.547382
Target:  5'- aCAGGUggUCgGGCGccgcagauccgaccGCGCGCG-GCGUCa -3'
miRNA:   3'- gGUCCG--AG-CCGC--------------CGCGCGCgCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 132133 0.66 0.547382
Target:  5'- cCCA-GCUCGcGCcggcggugguugacGGCGCGCagcuGCGCGgCCg -3'
miRNA:   3'- -GGUcCGAGC-CG--------------CCGCGCG----CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 96398 0.66 0.547382
Target:  5'- gCCGGcGCaCGGCGGC-CGCcaccgcggggaucaGCGCGagcUCCg -3'
miRNA:   3'- -GGUC-CGaGCCGCCGcGCG--------------CGCGC---AGG- -5'
29546 3' -64.1 NC_006151.1 + 3082 0.66 0.544572
Target:  5'- -uGGGCgaaggCGGCGagcaGCGCcgagaggccgccgcgGCGCGgGUCCc -3'
miRNA:   3'- ggUCCGa----GCCGC----CGCG---------------CGCGCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130475 0.66 0.541768
Target:  5'- -aGGGCgauggccugccgcagCGcGCGGCGCcacacgcCGCGCGUCUc -3'
miRNA:   3'- ggUCCGa--------------GC-CGCCGCGc------GCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 95114 0.66 0.540834
Target:  5'- uCCucGGCgauGGCGGCGUugagGCGCcGCG-CCg -3'
miRNA:   3'- -GGu-CCGag-CCGCCGCG----CGCG-CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 92124 0.66 0.540834
Target:  5'- uUCGGGaaCGGCcGCauCGCGCGCGgcgCCa -3'
miRNA:   3'- -GGUCCgaGCCGcCGc-GCGCGCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 37457 0.66 0.540834
Target:  5'- gCCAGGCcgCGGCccgcuacCGCGC-CGCGgCCg -3'
miRNA:   3'- -GGUCCGa-GCCGcc-----GCGCGcGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 30885 0.66 0.540834
Target:  5'- -gGGGaagaGGCGGCGagcggaGCGCGCGguagcgCCc -3'
miRNA:   3'- ggUCCgag-CCGCCGCg-----CGCGCGCa-----GG- -5'
29546 3' -64.1 NC_006151.1 + 7032 0.66 0.540834
Target:  5'- gCCAucucGGCUCgcccgGGCcaaugGGCGCGCGgagGCGUCUc -3'
miRNA:   3'- -GGU----CCGAG-----CCG-----CCGCGCGCg--CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 11692 0.66 0.540834
Target:  5'- aCgGGGCcgCGGgaCGGCGCGUGCgGCG-Cg -3'
miRNA:   3'- -GgUCCGa-GCC--GCCGCGCGCG-CGCaGg -5'
29546 3' -64.1 NC_006151.1 + 54135 0.66 0.540834
Target:  5'- aCGGGCUcugcccCGGCGGCGC-CGCGg---- -3'
miRNA:   3'- gGUCCGA------GCCGCCGCGcGCGCgcagg -5'
29546 3' -64.1 NC_006151.1 + 65816 0.66 0.540834
Target:  5'- gCCGcGGUggaUgGGCGGcCGCGCcaGCGCGgCCc -3'
miRNA:   3'- -GGU-CCG---AgCCGCC-GCGCG--CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 89966 0.66 0.540834
Target:  5'- aCCGGGCgCGGCuGGCGacguagGUGCaCGUgCCg -3'
miRNA:   3'- -GGUCCGaGCCG-CCGCg-----CGCGcGCA-GG- -5'
29546 3' -64.1 NC_006151.1 + 99357 0.66 0.540834
Target:  5'- gCAcGGCggucgUCGGCGGCGuCGUGCaccGCcUCCu -3'
miRNA:   3'- gGU-CCG-----AGCCGCCGC-GCGCG---CGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 133386 0.66 0.540834
Target:  5'- gCCGGGg-CGGCGGCcggggccgaGCGgGCG-GUCUu -3'
miRNA:   3'- -GGUCCgaGCCGCCG---------CGCgCGCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 82160 0.66 0.537104
Target:  5'- uCCAGGUccgagccgagcgcCGGgGGCGCGaucauGCGCaUCCg -3'
miRNA:   3'- -GGUCCGa------------GCCgCCGCGCg----CGCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 63337 0.67 0.531527
Target:  5'- -aAGGCcuccUCGGC-GCGCGCcCGCagGUCCu -3'
miRNA:   3'- ggUCCG----AGCCGcCGCGCGcGCG--CAGG- -5'
29546 3' -64.1 NC_006151.1 + 33293 0.67 0.531527
Target:  5'- cCCuucCcCGG-GGCGCGCGCGCGUgggaCCg -3'
miRNA:   3'- -GGuccGaGCCgCCGCGCGCGCGCA----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.