miRNA display CGI


Results 41 - 60 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 29133 0.66 0.559605
Target:  5'- gCCGGGaagUC-GCGGgaGCGCGCGUGaCCc -3'
miRNA:   3'- -GGUCCg--AGcCGCCg-CGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 104389 0.66 0.559605
Target:  5'- --cGGCUggcccgcaucgcCGGCGGCGUGCuggccCGCG-CCg -3'
miRNA:   3'- gguCCGA------------GCCGCCGCGCGc----GCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 129343 0.66 0.559605
Target:  5'- cCCGGGg-CGGcCGGCGCGCcgauaaauGCGCucgggguUCCg -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCG--------CGCGc------AGG- -5'
29546 3' -64.1 NC_006151.1 + 129607 0.66 0.559605
Target:  5'- gCGGGCaCGuGCGcaccaGCGgGUcgaGCGCGUCCa -3'
miRNA:   3'- gGUCCGaGC-CGC-----CGCgCG---CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130725 0.66 0.559605
Target:  5'- -gGGGCcCGcGCGGcCGCgGCGCaGCG-CCa -3'
miRNA:   3'- ggUCCGaGC-CGCC-GCG-CGCG-CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 135863 0.66 0.559605
Target:  5'- aCCGGGCacgUGGCcaGCGUccGCGUGCGgCCc -3'
miRNA:   3'- -GGUCCGa--GCCGc-CGCG--CGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 38817 0.66 0.559605
Target:  5'- cCCGcGCccgaCGGCGGCuucCGC-CGCGUCCc -3'
miRNA:   3'- -GGUcCGa---GCCGCCGc--GCGcGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 57466 0.66 0.558662
Target:  5'- gCCAGGUgccgcgccgCGGCGGCcucgcagGCGaCGCGCa--- -3'
miRNA:   3'- -GGUCCGa--------GCCGCCG-------CGC-GCGCGcagg -5'
29546 3' -64.1 NC_006151.1 + 71024 0.66 0.558662
Target:  5'- gCCGcGaGCUCGcggagcuGCGcGC-CGCGCGCGUCg -3'
miRNA:   3'- -GGU-C-CGAGC-------CGC-CGcGCGCGCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 9372 0.66 0.550195
Target:  5'- aCAGGCgacaggaGGgGGCccccCGCGCGgGUCg -3'
miRNA:   3'- gGUCCGag-----CCgCCGc---GCGCGCgCAGg -5'
29546 3' -64.1 NC_006151.1 + 61427 0.66 0.550195
Target:  5'- uCCucGGCcccgCcGCGGCGCcCGCccGCGUCCg -3'
miRNA:   3'- -GGu-CCGa---GcCGCCGCGcGCG--CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 63477 0.66 0.550195
Target:  5'- gCAGGggCGGCGGCG-GCGCcCGa-- -3'
miRNA:   3'- gGUCCgaGCCGCCGCgCGCGcGCagg -5'
29546 3' -64.1 NC_006151.1 + 65481 0.66 0.550195
Target:  5'- aUCAGGCgcaccacgccgCGGacgcCGGCGgaGCGCGCcUCCu -3'
miRNA:   3'- -GGUCCGa----------GCC----GCCGCg-CGCGCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 94731 0.66 0.550195
Target:  5'- gCCAcGGCguccCGGCGcGCGCacuCGCGCGgaaacaggcgCCg -3'
miRNA:   3'- -GGU-CCGa---GCCGC-CGCGc--GCGCGCa---------GG- -5'
29546 3' -64.1 NC_006151.1 + 98024 0.66 0.550195
Target:  5'- gCCAGGUccgcggGGUGGCGCaGCGCGagcaCCa -3'
miRNA:   3'- -GGUCCGag----CCGCCGCG-CGCGCgca-GG- -5'
29546 3' -64.1 NC_006151.1 + 19292 0.66 0.550195
Target:  5'- aCCgGGGC-CaGCGGCGCGgGCG-G-CCg -3'
miRNA:   3'- -GG-UCCGaGcCGCCGCGCgCGCgCaGG- -5'
29546 3' -64.1 NC_006151.1 + 102091 0.66 0.550195
Target:  5'- aCGaGCUCGaggagcacGUGGuCGCGUGCGCGggCCg -3'
miRNA:   3'- gGUcCGAGC--------CGCC-GCGCGCGCGCa-GG- -5'
29546 3' -64.1 NC_006151.1 + 110954 0.66 0.550195
Target:  5'- aCAGGgUcCGGCgGGCGUccuccacgaucGCGUGCG-CCu -3'
miRNA:   3'- gGUCCgA-GCCG-CCGCG-----------CGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 127422 0.66 0.550195
Target:  5'- gCGGGgUCGccuCGGCGCucGUGCGCGagagCCg -3'
miRNA:   3'- gGUCCgAGCc--GCCGCG--CGCGCGCa---GG- -5'
29546 3' -64.1 NC_006151.1 + 92758 0.66 0.550195
Target:  5'- aCGGGCaccUGaGCGuGCuGCG-GCGCGUCCc -3'
miRNA:   3'- gGUCCGa--GC-CGC-CG-CGCgCGCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.