miRNA display CGI


Results 41 - 60 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 18987 0.72 0.280162
Target:  5'- aCgAGGCguaCGcGCGGCgcgccaccagccGCGCGCGCG-CCg -3'
miRNA:   3'- -GgUCCGa--GC-CGCCG------------CGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 19055 0.75 0.157263
Target:  5'- aCCGGGCgcaGGCacucgGGCGCGCGCGgGUg- -3'
miRNA:   3'- -GGUCCGag-CCG-----CCGCGCGCGCgCAgg -5'
29546 3' -64.1 NC_006151.1 + 19116 0.85 0.036914
Target:  5'- gCAGGCaccgCGGgGGCGCGCGCGCGUaguaCCa -3'
miRNA:   3'- gGUCCGa---GCCgCCGCGCGCGCGCA----GG- -5'
29546 3' -64.1 NC_006151.1 + 19267 0.69 0.385161
Target:  5'- gCgGGGCUC-GUGGCGCGCG-GgGcCCa -3'
miRNA:   3'- -GgUCCGAGcCGCCGCGCGCgCgCaGG- -5'
29546 3' -64.1 NC_006151.1 + 19292 0.66 0.550195
Target:  5'- aCCgGGGC-CaGCGGCGCGgGCG-G-CCg -3'
miRNA:   3'- -GG-UCCGaGcCGCCGCGCgCGCgCaGG- -5'
29546 3' -64.1 NC_006151.1 + 19620 0.67 0.503975
Target:  5'- uCCcGGCcaccaCGGCGccguCGcCGCGCGCGUCg -3'
miRNA:   3'- -GGuCCGa----GCCGCc---GC-GCGCGCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 20139 0.73 0.228844
Target:  5'- gCGGGCgccgCGGgGGCG-GCGCGUGgaccgCCg -3'
miRNA:   3'- gGUCCGa---GCCgCCGCgCGCGCGCa----GG- -5'
29546 3' -64.1 NC_006151.1 + 20179 0.68 0.450874
Target:  5'- cCCGGGUcgCGGcCGGUagaugcgauuccGCGCGCaGCG-CCg -3'
miRNA:   3'- -GGUCCGa-GCC-GCCG------------CGCGCG-CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 20312 0.68 0.450015
Target:  5'- gCCGuGGCguuggCGGCGGCGagcaggaCGCGCgacacgacgcugGCGUUCa -3'
miRNA:   3'- -GGU-CCGa----GCCGCCGC-------GCGCG------------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 20452 0.7 0.362205
Target:  5'- gCgGGGCUCGGgGGUG-GCGcCG-GUCCc -3'
miRNA:   3'- -GgUCCGAGCCgCCGCgCGC-GCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 20506 0.67 0.530599
Target:  5'- cUCuGGCUCgaucgggGGCGGCGUGgUGaacacgGCGUCCu -3'
miRNA:   3'- -GGuCCGAG-------CCGCCGCGC-GCg-----CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 20751 0.68 0.477059
Target:  5'- gCCGGcGCgccuccaccgCGGCGGaCGCGCGCcggGCGagCg -3'
miRNA:   3'- -GGUC-CGa---------GCCGCC-GCGCGCG---CGCagG- -5'
29546 3' -64.1 NC_006151.1 + 20836 0.71 0.298543
Target:  5'- gCGGGggcagaggucguaCUCGGCGGCGUacucGCGCGUGUa- -3'
miRNA:   3'- gGUCC-------------GAGCCGCCGCG----CGCGCGCAgg -5'
29546 3' -64.1 NC_006151.1 + 21425 0.67 0.513093
Target:  5'- cUCGGGcCUCGGgGGuCGCG-GCGUGggguggCCc -3'
miRNA:   3'- -GGUCC-GAGCCgCC-GCGCgCGCGCa-----GG- -5'
29546 3' -64.1 NC_006151.1 + 21485 0.74 0.190115
Target:  5'- cUCGGGCa-GGCGGCcgggggGCGCGgGCGUCa -3'
miRNA:   3'- -GGUCCGagCCGCCG------CGCGCgCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 21605 0.72 0.268016
Target:  5'- --cGGCguggCGGCGGCGUaggcccGCGggaGCGUCCg -3'
miRNA:   3'- gguCCGa---GCCGCCGCG------CGCg--CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 22271 0.74 0.208705
Target:  5'- gCGGGCggggggaaGGuCGGCGCGgGCacgGCGUCCa -3'
miRNA:   3'- gGUCCGag------CC-GCCGCGCgCG---CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 22819 0.69 0.40906
Target:  5'- gUCAGGUgcaGGgGGCGCGaggcgaGCGCGcugCCc -3'
miRNA:   3'- -GGUCCGag-CCgCCGCGCg-----CGCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 23023 0.66 0.578554
Target:  5'- -gGGGUgguggaGGCGGCGaagaaGCGgGCGgCCg -3'
miRNA:   3'- ggUCCGag----CCGCCGCg----CGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 23145 0.67 0.531527
Target:  5'- gCCGGGCccUCGGCGGgaGCG-GCGgGagagCCc -3'
miRNA:   3'- -GGUCCG--AGCCGCCg-CGCgCGCgCa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.