miRNA display CGI


Results 21 - 40 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 10280 0.73 0.234129
Target:  5'- gCC-GGCUCccaGGCGGCGgGCacguccCGCGUCCc -3'
miRNA:   3'- -GGuCCGAG---CCGCCGCgCGc-----GCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 10515 0.69 0.385161
Target:  5'- gCAGGCgCGucccCGGCGCGgGCGCcucUCCa -3'
miRNA:   3'- gGUCCGaGCc---GCCGCGCgCGCGc--AGG- -5'
29546 3' -64.1 NC_006151.1 + 10578 0.67 0.515842
Target:  5'- gCC-GGCUCGGCGGCccggcccuuccucCGCccuccucccuccccGCGCGcCCg -3'
miRNA:   3'- -GGuCCGAGCCGCCGc------------GCG--------------CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 10660 0.73 0.234129
Target:  5'- cCCAGGCggCGGgGGaGCGCggaGCGCG-CCg -3'
miRNA:   3'- -GGUCCGa-GCCgCCgCGCG---CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 10916 0.79 0.096501
Target:  5'- aCCGGGgUCGGgcccaCGGCgccgaggguggGCGCGCGUGUCCg -3'
miRNA:   3'- -GGUCCgAGCC-----GCCG-----------CGCGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 11347 0.66 0.588081
Target:  5'- gCGGGC-CGcccGCgGGCGCuacCGCGCGcUCCg -3'
miRNA:   3'- gGUCCGaGC---CG-CCGCGc--GCGCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 11692 0.66 0.540834
Target:  5'- aCgGGGCcgCGGgaCGGCGCGUGCgGCG-Cg -3'
miRNA:   3'- -GgUCCGa-GCC--GCCGCGCGCG-CGCaGg -5'
29546 3' -64.1 NC_006151.1 + 16864 0.73 0.239516
Target:  5'- uCUAGGagaugguacaUCGcGgGGCGCGCuCGCGUCCg -3'
miRNA:   3'- -GGUCCg---------AGC-CgCCGCGCGcGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 17074 0.72 0.2563
Target:  5'- cCCGGGCcgccgcCGGgucaGGCGCGCGCcCGUCg -3'
miRNA:   3'- -GGUCCGa-----GCCg---CCGCGCGCGcGCAGg -5'
29546 3' -64.1 NC_006151.1 + 17117 0.7 0.354766
Target:  5'- -gGGGCUcCGGCGGCG-GUGCuGCGggaggcggCCa -3'
miRNA:   3'- ggUCCGA-GCCGCCGCgCGCG-CGCa-------GG- -5'
29546 3' -64.1 NC_006151.1 + 17302 0.69 0.390655
Target:  5'- cCCGGGCUUcgagccguccgccgGGgGGCGcCGCGUcagcucguGCGUCUc -3'
miRNA:   3'- -GGUCCGAG--------------CCgCCGC-GCGCG--------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 17472 0.68 0.433863
Target:  5'- gCCGcGGCguguccucgUCGGCGGCGCGC-CGCu--- -3'
miRNA:   3'- -GGU-CCG---------AGCCGCCGCGCGcGCGcagg -5'
29546 3' -64.1 NC_006151.1 + 17609 0.66 0.559605
Target:  5'- aCCAcGGUgauGGCcgucacccccauGGCGCGaGCGCGUUCg -3'
miRNA:   3'- -GGU-CCGag-CCG------------CCGCGCgCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 17819 0.7 0.347436
Target:  5'- cCUGGGCgCGGCGGgGCGgGCG-G-CCa -3'
miRNA:   3'- -GGUCCGaGCCGCCgCGCgCGCgCaGG- -5'
29546 3' -64.1 NC_006151.1 + 17908 0.66 0.588081
Target:  5'- aCCA-GCgCGGCGGCGCugauCGCGaCG-CCc -3'
miRNA:   3'- -GGUcCGaGCCGCCGCGc---GCGC-GCaGG- -5'
29546 3' -64.1 NC_006151.1 + 17938 0.77 0.126509
Target:  5'- aUCAGGCagCGGCGGCGUcuccgGCGCccgccugccgGCGUCCc -3'
miRNA:   3'- -GGUCCGa-GCCGCCGCG-----CGCG----------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 18156 0.69 0.40906
Target:  5'- gCGGGggCGGCGGCGggcaugucggaaUGCGgGCGggCCg -3'
miRNA:   3'- gGUCCgaGCCGCCGC------------GCGCgCGCa-GG- -5'
29546 3' -64.1 NC_006151.1 + 18499 0.69 0.41723
Target:  5'- gCAGGCUgguguacacCGGCGaGaGCaUGCGCGUCCc -3'
miRNA:   3'- gGUCCGA---------GCCGC-CgCGcGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 18662 0.75 0.16654
Target:  5'- cCCGGGCgucgucCGGCcguacggguuccacgGGCGCGCGgGCGgcgCCg -3'
miRNA:   3'- -GGUCCGa-----GCCG---------------CCGCGCGCgCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 18817 0.69 0.41723
Target:  5'- aCUcGGCcgCGGUGGCGacgaGCGUGUaGUCCc -3'
miRNA:   3'- -GGuCCGa-GCCGCCGCg---CGCGCG-CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.