miRNA display CGI


Results 21 - 40 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 133149 0.78 0.106543
Target:  5'- -aGGGaCUCGGCGGCgGCGCGgGCGUgggCCu -3'
miRNA:   3'- ggUCC-GAGCCGCCG-CGCGCgCGCA---GG- -5'
29546 3' -64.1 NC_006151.1 + 125314 0.78 0.111924
Target:  5'- aCGGGCUCGGCGGaguuuGCGCGCcuGCaGUUCa -3'
miRNA:   3'- gGUCCGAGCCGCCg----CGCGCG--CG-CAGG- -5'
29546 3' -64.1 NC_006151.1 + 56328 0.78 0.114709
Target:  5'- cCUGGGC-CGGUGGCuggagcGCGCGCGCGcCCc -3'
miRNA:   3'- -GGUCCGaGCCGCCG------CGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 120313 0.77 0.117559
Target:  5'- aCGGGCUCGGgcagccucuCGGaCGcCGCGCGCGcCCg -3'
miRNA:   3'- gGUCCGAGCC---------GCC-GC-GCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 135102 0.77 0.120475
Target:  5'- gCCGGGCgggCGGCGGUaGCGCGCGgGg-- -3'
miRNA:   3'- -GGUCCGa--GCCGCCG-CGCGCGCgCagg -5'
29546 3' -64.1 NC_006151.1 + 118239 0.77 0.126509
Target:  5'- aCCGGGCUCGGCGGCGgGCucaCGCu--- -3'
miRNA:   3'- -GGUCCGAGCCGCCGCgCGc--GCGcagg -5'
29546 3' -64.1 NC_006151.1 + 17938 0.77 0.126509
Target:  5'- aUCAGGCagCGGCGGCGUcuccgGCGCccgccugccgGCGUCCc -3'
miRNA:   3'- -GGUCCGa-GCCGCCGCG-----CGCG----------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 26349 0.77 0.132822
Target:  5'- aCgGGGCggCGGCGGgcCGCgucgggGCGCGCGUCCc -3'
miRNA:   3'- -GgUCCGa-GCCGCC--GCG------CGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 67863 0.76 0.142837
Target:  5'- gCCGGcGCcgaGGUGGCGCGCGCGCcagCCc -3'
miRNA:   3'- -GGUC-CGag-CCGCCGCGCGCGCGca-GG- -5'
29546 3' -64.1 NC_006151.1 + 123111 0.76 0.145271
Target:  5'- gCGGcGCUCGGCGGCgagccuggcgcaguGCGUGCGCGagCa -3'
miRNA:   3'- gGUC-CGAGCCGCCG--------------CGCGCGCGCagG- -5'
29546 3' -64.1 NC_006151.1 + 19055 0.75 0.157263
Target:  5'- aCCGGGCgcaGGCacucgGGCGCGCGCGgGUg- -3'
miRNA:   3'- -GGUCCGag-CCG-----CCGCGCGCGCgCAgg -5'
29546 3' -64.1 NC_006151.1 + 130121 0.75 0.157263
Target:  5'- cCCGGGUUCuGGCcGUGgGCGCGCG-CCa -3'
miRNA:   3'- -GGUCCGAG-CCGcCGCgCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 65045 0.75 0.157263
Target:  5'- -gGGGCcCGGCGGCG-GCGgGCGcCCg -3'
miRNA:   3'- ggUCCGaGCCGCCGCgCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 77105 0.75 0.16107
Target:  5'- gCGGGCgCGGCGG-GCGCGCGC--CCa -3'
miRNA:   3'- gGUCCGaGCCGCCgCGCGCGCGcaGG- -5'
29546 3' -64.1 NC_006151.1 + 98368 0.75 0.16107
Target:  5'- gCGGGCUCuG-GGCGCGCGCGCugcgCCu -3'
miRNA:   3'- gGUCCGAGcCgCCGCGCGCGCGca--GG- -5'
29546 3' -64.1 NC_006151.1 + 56588 0.75 0.162616
Target:  5'- aCGGGCUggugcggacgcgcccCGGCGGCGCGCucacCGCGcCCc -3'
miRNA:   3'- gGUCCGA---------------GCCGCCGCGCGc---GCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 54375 0.75 0.16496
Target:  5'- cCCGGGaCUggaUGGCGcaccuGCGCGCGCGCGgCCu -3'
miRNA:   3'- -GGUCC-GA---GCCGC-----CGCGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 64458 0.75 0.16496
Target:  5'- gUCAGGa-UGGCGGCGCGCGC-CG-CCg -3'
miRNA:   3'- -GGUCCgaGCCGCCGCGCGCGcGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 84425 0.75 0.16496
Target:  5'- -aAGGCggcgcgCGGCGGCGCGCG-GCccauGUCCc -3'
miRNA:   3'- ggUCCGa-----GCCGCCGCGCGCgCG----CAGG- -5'
29546 3' -64.1 NC_006151.1 + 118745 0.75 0.16496
Target:  5'- gCUGGGCcCGGCGGCcgugccacGCGCGUGCGgaaCCu -3'
miRNA:   3'- -GGUCCGaGCCGCCG--------CGCGCGCGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.