miRNA display CGI


Results 21 - 40 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 135364 0.68 0.459516
Target:  5'- gCCGcGCgUUGGCcGCGUGCGCcgcgaccacgGCGUCCa -3'
miRNA:   3'- -GGUcCG-AGCCGcCGCGCGCG----------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 135102 0.77 0.120475
Target:  5'- gCCGGGCgggCGGCGGUaGCGCGCGgGg-- -3'
miRNA:   3'- -GGUCCGa--GCCGCCG-CGCGCGCgCagg -5'
29546 3' -64.1 NC_006151.1 + 135022 0.66 0.559605
Target:  5'- -gGGGCagCaGCGGgGC-CGCGuCGUCCu -3'
miRNA:   3'- ggUCCGa-GcCGCCgCGcGCGC-GCAGG- -5'
29546 3' -64.1 NC_006151.1 + 134963 0.71 0.312428
Target:  5'- gCAGGcCUCGGCcagccuccgGGCcuucucggGCGgGCGCGUCUu -3'
miRNA:   3'- gGUCC-GAGCCG---------CCG--------CGCgCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 134799 0.69 0.40906
Target:  5'- -gAGGCcgCGGCGGCcCGCGC-CGgacCCg -3'
miRNA:   3'- ggUCCGa-GCCGCCGcGCGCGcGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 133905 0.73 0.245006
Target:  5'- aCCGGGaCUCcccuGGCGGCGCagGCG-GCGuUCCa -3'
miRNA:   3'- -GGUCC-GAG----CCGCCGCG--CGCgCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 133670 0.71 0.311756
Target:  5'- gCC-GGCgCGGCGGCGCGCccccgagGCG-GUCUc -3'
miRNA:   3'- -GGuCCGaGCCGCCGCGCG-------CGCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 133488 0.71 0.29274
Target:  5'- gCGGGCgucaccUUGGCGGCGCGggggGCGCGggaggagCCg -3'
miRNA:   3'- gGUCCG------AGCCGCCGCGCg---CGCGCa------GG- -5'
29546 3' -64.1 NC_006151.1 + 133386 0.66 0.540834
Target:  5'- gCCGGGg-CGGCGGCcggggccgaGCGgGCG-GUCUu -3'
miRNA:   3'- -GGUCCgaGCCGCCG---------CGCgCGCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 133310 0.7 0.362205
Target:  5'- cCCGGGggCGGCccgugucgaGGCGCGCcGgGCGgCCg -3'
miRNA:   3'- -GGUCCgaGCCG---------CCGCGCG-CgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 133149 0.78 0.106543
Target:  5'- -aGGGaCUCGGCGGCgGCGCGgGCGUgggCCu -3'
miRNA:   3'- ggUCC-GAGCCGCCG-CGCGCgCGCA---GG- -5'
29546 3' -64.1 NC_006151.1 + 133099 0.66 0.588081
Target:  5'- gCAGGaa--GCGGUcgaGCGC-CGCGUCCg -3'
miRNA:   3'- gGUCCgagcCGCCG---CGCGcGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 132789 0.66 0.578554
Target:  5'- gCCAGGUcgCuGaugaGGCGCugguacaGCGCGUCCg -3'
miRNA:   3'- -GGUCCGa-GcCg---CCGCGcg-----CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 132477 0.68 0.450874
Target:  5'- gUAGGCgucCaGCaGGCGCGCGUaGCGcUCCu -3'
miRNA:   3'- gGUCCGa--GcCG-CCGCGCGCG-CGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 132416 0.74 0.194621
Target:  5'- gCCGGaGCUUGcccucgucGCGGCGCGCcuGCGCGUgCa -3'
miRNA:   3'- -GGUC-CGAGC--------CGCCGCGCG--CGCGCAgG- -5'
29546 3' -64.1 NC_006151.1 + 132133 0.66 0.547382
Target:  5'- cCCA-GCUCGcGCcggcggugguugacGGCGCGCagcuGCGCGgCCg -3'
miRNA:   3'- -GGUcCGAGC-CG--------------CCGCGCG----CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 132033 0.71 0.31921
Target:  5'- -gAGGUagcCGGCGGCGCGCggcaGCGCGg-- -3'
miRNA:   3'- ggUCCGa--GCCGCCGCGCG----CGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 131647 0.66 0.547382
Target:  5'- aCAGGUggUCgGGCGccgcagauccgaccGCGCGCG-GCGUCa -3'
miRNA:   3'- gGUCCG--AG-CCGC--------------CGCGCGCgCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 131090 0.66 0.559605
Target:  5'- aCAGGUaguccacgUCGGCGGgGgGCccggccgcgGCGCGggaggCCg -3'
miRNA:   3'- gGUCCG--------AGCCGCCgCgCG---------CGCGCa----GG- -5'
29546 3' -64.1 NC_006151.1 + 130989 0.69 0.385161
Target:  5'- cCCGGGCUgaaacuggCGGCGGUagaGCGUGCcgGCGUa- -3'
miRNA:   3'- -GGUCCGA--------GCCGCCG---CGCGCG--CGCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.