miRNA display CGI


Results 1 - 20 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 141748 0.72 0.273428
Target:  5'- -gGGGCgCGG-GGCGCGCGCcccggugGCGUCg -3'
miRNA:   3'- ggUCCGaGCCgCCGCGCGCG-------CGCAGg -5'
29546 3' -64.1 NC_006151.1 + 141694 0.66 0.56906
Target:  5'- cCCAcGGCggcUGGCGGCGgaCGCG-GUGcCCg -3'
miRNA:   3'- -GGU-CCGa--GCCGCCGC--GCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 141626 0.71 0.291463
Target:  5'- aUCGGGCgggucgcugccgCGGCGGCGCG-GCGgGgccCCg -3'
miRNA:   3'- -GGUCCGa-----------GCCGCCGCGCgCGCgCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 141391 0.7 0.325408
Target:  5'- cCCGGGCaaacagCGGCguguccggcgaucGGUGCGgGCGCGgCCc -3'
miRNA:   3'- -GGUCCGa-----GCCG-------------CCGCGCgCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 140055 0.72 0.274035
Target:  5'- gCAcGCcaccgaGGCGGCGCGCGUGC-UCCg -3'
miRNA:   3'- gGUcCGag----CCGCCGCGCGCGCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 139650 0.69 0.393025
Target:  5'- gCgGGGgUC-GCGGCGgGCGCGcCGcCCg -3'
miRNA:   3'- -GgUCCgAGcCGCCGCgCGCGC-GCaGG- -5'
29546 3' -64.1 NC_006151.1 + 139206 0.75 0.175888
Target:  5'- gCUGGaGCUCcuGGCGGCGacgcugccgcacauCGCGCGCGUCUc -3'
miRNA:   3'- -GGUC-CGAG--CCGCCGC--------------GCGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 139078 0.73 0.218576
Target:  5'- cUCGGGCUCcgccuGGgGGCGCGCaugGCGCuGUUCa -3'
miRNA:   3'- -GGUCCGAG-----CCgCCGCGCG---CGCG-CAGG- -5'
29546 3' -64.1 NC_006151.1 + 138709 0.68 0.477059
Target:  5'- cCCGGcGCUgcGCGcCGCGCGCGgGUCg -3'
miRNA:   3'- -GGUC-CGAgcCGCcGCGCGCGCgCAGg -5'
29546 3' -64.1 NC_006151.1 + 137755 0.71 0.286397
Target:  5'- aCAcGGUccgCGGCcuGGCGCGCGUGC-UCCa -3'
miRNA:   3'- gGU-CCGa--GCCG--CCGCGCGCGCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 137602 0.71 0.299193
Target:  5'- gUCGGGaUCGGgGGCGCGgGCGgGgaccCCg -3'
miRNA:   3'- -GGUCCgAGCCgCCGCGCgCGCgCa---GG- -5'
29546 3' -64.1 NC_006151.1 + 137523 0.69 0.393025
Target:  5'- gCCGGGCgacgaggacUgGGCGGacuggGaCGCGgGCGUCCc -3'
miRNA:   3'- -GGUCCG---------AgCCGCCg----C-GCGCgCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 137124 0.67 0.503975
Target:  5'- -gGGGCgcgCGacggcGCGGCGCGaCGCgGCG-CCg -3'
miRNA:   3'- ggUCCGa--GC-----CGCCGCGC-GCG-CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 136989 0.75 0.181376
Target:  5'- gCCGGGC--GGCgGGCGCGCGCGCa--- -3'
miRNA:   3'- -GGUCCGagCCG-CCGCGCGCGCGcagg -5'
29546 3' -64.1 NC_006151.1 + 136832 0.68 0.450874
Target:  5'- gCGGGCUCugcgacGCGGCcgccggccucGCGCGCcGCGUgaCCg -3'
miRNA:   3'- gGUCCGAGc-----CGCCG----------CGCGCG-CGCA--GG- -5'
29546 3' -64.1 NC_006151.1 + 136420 0.72 0.262105
Target:  5'- gCgGGGCcccgCGGCGGCGCacgccGCGCGCuacGUCg -3'
miRNA:   3'- -GgUCCGa---GCCGCCGCG-----CGCGCG---CAGg -5'
29546 3' -64.1 NC_006151.1 + 135905 0.69 0.393025
Target:  5'- gCCGccGCgacccCGGCGGuCGUGCGCGCGcUCUg -3'
miRNA:   3'- -GGUc-CGa----GCCGCC-GCGCGCGCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 135863 0.66 0.559605
Target:  5'- aCCGGGCacgUGGCcaGCGUccGCGUGCGgCCc -3'
miRNA:   3'- -GGUCCGa--GCCGc-CGCG--CGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 135488 0.7 0.326102
Target:  5'- gCGGGC-CaGGCGGCGCGCG-GCcucggCCg -3'
miRNA:   3'- gGUCCGaG-CCGCCGCGCGCgCGca---GG- -5'
29546 3' -64.1 NC_006151.1 + 135455 0.75 0.177141
Target:  5'- gCAGGCcUGGUaGGUGCGCGCcagcGUGUCCg -3'
miRNA:   3'- gGUCCGaGCCG-CCGCGCGCG----CGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.