miRNA display CGI


Results 41 - 60 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 5096 0.66 0.5919
Target:  5'- gCGGGCgccggcggagacggUGGCGGCccgGCGCGgGCGa-- -3'
miRNA:   3'- gGUCCGa-------------GCCGCCG---CGCGCgCGCagg -5'
29546 3' -64.1 NC_006151.1 + 88176 0.66 0.5919
Target:  5'- gCCgAGGUgguagacggugUCGGCGGCGUggucggaccaggcgaGgCGCGCcUCCg -3'
miRNA:   3'- -GG-UCCG-----------AGCCGCCGCG---------------C-GCGCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 85598 0.65 0.594767
Target:  5'- uCCA-GCUCGGCGcgcucgugcccaacGCGCcgccgcCGCGCGgcgCCa -3'
miRNA:   3'- -GGUcCGAGCCGC--------------CGCGc-----GCGCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 52972 0.65 0.595724
Target:  5'- gCAGGCggcucauguacgCGcugaccucGCGGUGCGacgaguacagGCGCGUCCa -3'
miRNA:   3'- gGUCCGa-----------GC--------CGCCGCGCg---------CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 78040 0.65 0.59668
Target:  5'- uCCcGGCgacgCGGCgcaucugGGCGaCGCGCgGCGggagCCu -3'
miRNA:   3'- -GGuCCGa---GCCG-------CCGC-GCGCG-CGCa---GG- -5'
29546 3' -64.1 NC_006151.1 + 60744 0.66 0.588081
Target:  5'- aCgAGGCagCGGCGGCuCGCGaagGCGgUCg -3'
miRNA:   3'- -GgUCCGa-GCCGCCGcGCGCg--CGC-AGg -5'
29546 3' -64.1 NC_006151.1 + 17908 0.66 0.588081
Target:  5'- aCCA-GCgCGGCGGCGCugauCGCGaCG-CCc -3'
miRNA:   3'- -GGUcCGaGCCGCCGCGc---GCGC-GCaGG- -5'
29546 3' -64.1 NC_006151.1 + 70093 0.66 0.56906
Target:  5'- gCguGGg-CGGCgaagGGCGCGaGCGgGUCCa -3'
miRNA:   3'- -GguCCgaGCCG----CCGCGCgCGCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 128013 0.66 0.56906
Target:  5'- gCGGGg-CGGCGGCGa-CG-GCGUCUg -3'
miRNA:   3'- gGUCCgaGCCGCCGCgcGCgCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 40430 0.66 0.56906
Target:  5'- cCCucGGCcCGGCGGCGCuugccuccccgGCGCcuGCcUCCc -3'
miRNA:   3'- -GGu-CCGaGCCGCCGCG-----------CGCG--CGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 141694 0.66 0.56906
Target:  5'- cCCAcGGCggcUGGCGGCGgaCGCG-GUGcCCg -3'
miRNA:   3'- -GGU-CCGa--GCCGCCGC--GCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 125461 0.66 0.577603
Target:  5'- cCCAGcGCcgUGGCcacGGcCGCGCucggccaGCGCGUCUc -3'
miRNA:   3'- -GGUC-CGa-GCCG---CC-GCGCG-------CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130768 0.66 0.577603
Target:  5'- gCCAGGaa-GGUcccgucgGGCaUGuCGCGCGUCCa -3'
miRNA:   3'- -GGUCCgagCCG-------CCGcGC-GCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 132789 0.66 0.578554
Target:  5'- gCCAGGUcgCuGaugaGGCGCugguacaGCGCGUCCg -3'
miRNA:   3'- -GGUCCGa-GcCg---CCGCGcg-----CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 23023 0.66 0.578554
Target:  5'- -gGGGUgguggaGGCGGCGaagaaGCGgGCGgCCg -3'
miRNA:   3'- ggUCCGag----CCGCCGCg----CGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 70196 0.66 0.578554
Target:  5'- gCUuGGuCUCGuuGGCGaUGUGgGCGUCCa -3'
miRNA:   3'- -GGuCC-GAGCcgCCGC-GCGCgCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 97802 0.66 0.578554
Target:  5'- cUCAGGCgc-GCGGC-CGUGCGCcgGUCg -3'
miRNA:   3'- -GGUCCGagcCGCCGcGCGCGCG--CAGg -5'
29546 3' -64.1 NC_006151.1 + 25334 0.66 0.578554
Target:  5'- gCCGGGa-CGGcCGGCGUGC-CGCGa-- -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCGcGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 102929 0.66 0.578554
Target:  5'- gCCgAGGagCGGCuGCGCGCGCuggacgcgGCGcCCg -3'
miRNA:   3'- -GG-UCCgaGCCGcCGCGCGCG--------CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 118203 0.66 0.578554
Target:  5'- gCCGGGCacgUGGCcguGGUG-GCGgGCGcCCg -3'
miRNA:   3'- -GGUCCGa--GCCG---CCGCgCGCgCGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.