miRNA display CGI


Results 61 - 80 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 25334 0.66 0.578554
Target:  5'- gCCGGGa-CGGcCGGCGUGC-CGCGa-- -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCGcGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 26215 0.67 0.485954
Target:  5'- -gAGGUUCGaGCGGCGgGCcGcCGUGUUUa -3'
miRNA:   3'- ggUCCGAGC-CGCCGCgCG-C-GCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 26349 0.77 0.132822
Target:  5'- aCgGGGCggCGGCGGgcCGCgucgggGCGCGCGUCCc -3'
miRNA:   3'- -GgUCCGa-GCCGCC--GCG------CGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 27037 0.66 0.56906
Target:  5'- -gGGGC-CGaGgGGCGCugGCGCGUGUagcCCa -3'
miRNA:   3'- ggUCCGaGC-CgCCGCG--CGCGCGCA---GG- -5'
29546 3' -64.1 NC_006151.1 + 27085 0.74 0.194621
Target:  5'- -aGGGCgCGGCGcaGgGCGCGCGUGUCg -3'
miRNA:   3'- ggUCCGaGCCGC--CgCGCGCGCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 27150 0.67 0.522279
Target:  5'- -gAGGCgguucacgUCGGCcccgaGGCGC-CGCGUGUCg -3'
miRNA:   3'- ggUCCG--------AGCCG-----CCGCGcGCGCGCAGg -5'
29546 3' -64.1 NC_006151.1 + 27440 0.68 0.468246
Target:  5'- -uGGGCgCGGCGGaCGCG-GUGgGUCg -3'
miRNA:   3'- ggUCCGaGCCGCC-GCGCgCGCgCAGg -5'
29546 3' -64.1 NC_006151.1 + 28093 0.7 0.347436
Target:  5'- uCCGGGCguccUCGaGCGGgGCGCG-GC-UCCu -3'
miRNA:   3'- -GGUCCG----AGC-CGCCgCGCGCgCGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 28127 0.72 0.274035
Target:  5'- --cGGCUCGG-GGCGCGCucCGCG-CCu -3'
miRNA:   3'- gguCCGAGCCgCCGCGCGc-GCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 28289 0.68 0.442322
Target:  5'- gCGGGCcCGGCucccccauuGGC-CG-GCGCGUCCc -3'
miRNA:   3'- gGUCCGaGCCG---------CCGcGCgCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 28773 0.73 0.236271
Target:  5'- gCCAGGacccgagUCGGCGGgGCGguccggcccgcgggaCGgGCGUCCg -3'
miRNA:   3'- -GGUCCg------AGCCGCCgCGC---------------GCgCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 28849 0.68 0.442322
Target:  5'- gCGGGCcCGGCucccccauuGGC-CG-GCGCGUCCc -3'
miRNA:   3'- gGUCCGaGCCG---------CCGcGCgCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 29133 0.66 0.559605
Target:  5'- gCCGGGaagUC-GCGGgaGCGCGCGUGaCCc -3'
miRNA:   3'- -GGUCCg--AGcCGCCg-CGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 30337 0.74 0.190115
Target:  5'- -gAGGCggCGGCGGCGCGaggGCGCGa-- -3'
miRNA:   3'- ggUCCGa-GCCGCCGCGCg--CGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 30613 0.73 0.213592
Target:  5'- gCGGGCggUCGGCGuGCGCGCuGUGCGg-- -3'
miRNA:   3'- gGUCCG--AGCCGC-CGCGCG-CGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 30885 0.66 0.540834
Target:  5'- -gGGGaagaGGCGGCGagcggaGCGCGCGguagcgCCc -3'
miRNA:   3'- ggUCCgag-CCGCCGCg-----CGCGCGCa-----GG- -5'
29546 3' -64.1 NC_006151.1 + 31431 0.73 0.228844
Target:  5'- -gGGGgaCGG-GGUGCGCGCGCGUg- -3'
miRNA:   3'- ggUCCgaGCCgCCGCGCGCGCGCAgg -5'
29546 3' -64.1 NC_006151.1 + 31582 0.69 0.377403
Target:  5'- aCGGGgg-GGCGGCGCGCucCGCGcUCCc -3'
miRNA:   3'- gGUCCgagCCGCCGCGCGc-GCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 31750 0.79 0.087142
Target:  5'- gCCGGGgacgcgcCUgCGGCGGCGgGCGCGCG-CCg -3'
miRNA:   3'- -GGUCC-------GA-GCCGCCGCgCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 33293 0.67 0.531527
Target:  5'- cCCuucCcCGG-GGCGCGCGCGCGUgggaCCg -3'
miRNA:   3'- -GGuccGaGCCgCCGCGCGCGCGCA----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.