miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 86653 0.67 0.829953
Target:  5'- aGGAGGCGcucaCGCGCGCGcugcucUCGaCGGCCg- -3'
miRNA:   3'- -UUUUUGUa---GCGCGCGC------AGC-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 89245 0.67 0.829953
Target:  5'- -uGGGCGUCGUgucgaGCGcCGUCGUGGUCg- -3'
miRNA:   3'- uuUUUGUAGCG-----CGC-GCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 111540 0.67 0.829953
Target:  5'- --cGACAUCaugGCGCGCa--GCGGCCg- -3'
miRNA:   3'- uuuUUGUAG---CGCGCGcagCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 138529 0.67 0.829953
Target:  5'- cGGGGugAUgG-GCGCGUaCGcCGGCCUGg -3'
miRNA:   3'- -UUUUugUAgCgCGCGCA-GC-GCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 138149 0.67 0.821355
Target:  5'- gGAGGACcggCGCGCGC-UCGaGGCCUu -3'
miRNA:   3'- -UUUUUGua-GCGCGCGcAGCgCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 128586 0.67 0.821355
Target:  5'- --cGACAUCGUcucGCGCGgccCGCGcGCCa- -3'
miRNA:   3'- uuuUUGUAGCG---CGCGCa--GCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 98254 0.67 0.821355
Target:  5'- uGGAGGCGcUCGUGCGCGcgcUCGaggaGGCCg- -3'
miRNA:   3'- -UUUUUGU-AGCGCGCGC---AGCg---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 74733 0.68 0.81258
Target:  5'- --cGGCGUUGUGCGUGUUGC-GCCa- -3'
miRNA:   3'- uuuUUGUAGCGCGCGCAGCGcCGGac -5'
29546 5' -55.8 NC_006151.1 + 74855 0.68 0.81258
Target:  5'- --uGGCGUCGCGgaaggcgcCGCGcacCGCGGCCa- -3'
miRNA:   3'- uuuUUGUAGCGC--------GCGCa--GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 82373 0.68 0.81258
Target:  5'- -cGGACGcCGgGCGCGUCGaaGGCCa- -3'
miRNA:   3'- uuUUUGUaGCgCGCGCAGCg-CCGGac -5'
29546 5' -55.8 NC_006151.1 + 63904 0.68 0.81258
Target:  5'- -cGAGCAg-GCGCGCGUacgCGCGcGCCg- -3'
miRNA:   3'- uuUUUGUagCGCGCGCA---GCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 88448 0.68 0.81258
Target:  5'- cGGAGACG-CGCGUGCGgcgcccgagcUCGuCGGCCa- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGC----------AGC-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 111130 0.68 0.803637
Target:  5'- ---cGCGUCuGUGCGCGcccccgcgcgCGCGGCCg- -3'
miRNA:   3'- uuuuUGUAG-CGCGCGCa---------GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 135112 0.68 0.803637
Target:  5'- --cGGCGguaGCGCGCGggGCGGgCUGg -3'
miRNA:   3'- uuuUUGUag-CGCGCGCagCGCCgGAC- -5'
29546 5' -55.8 NC_006151.1 + 11896 0.68 0.803637
Target:  5'- ---cGCAUCGagGCGCGUCGgGGUUUu -3'
miRNA:   3'- uuuuUGUAGCg-CGCGCAGCgCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 35140 0.68 0.794533
Target:  5'- ----uCAUUG-GCGCGcCGCGGCCa- -3'
miRNA:   3'- uuuuuGUAGCgCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 76964 0.68 0.794533
Target:  5'- --cGGCcgCGCGCGCGUagaaggccagCGCGGUgaGg -3'
miRNA:   3'- uuuUUGuaGCGCGCGCA----------GCGCCGgaC- -5'
29546 5' -55.8 NC_006151.1 + 90137 0.68 0.794533
Target:  5'- cGGGGCGguaGUGCGCGUCG-GGCCc- -3'
miRNA:   3'- uUUUUGUag-CGCGCGCAGCgCCGGac -5'
29546 5' -55.8 NC_006151.1 + 125199 0.68 0.794533
Target:  5'- --cGGCGUCGUGgGCccCGCGGCCc- -3'
miRNA:   3'- uuuUUGUAGCGCgCGcaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 93670 0.68 0.794533
Target:  5'- aGGAGGCuGUCGCGCGgGgCGCGcGCCc- -3'
miRNA:   3'- -UUUUUG-UAGCGCGCgCaGCGC-CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.