miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 117259 0.67 0.862415
Target:  5'- cGAGGCG-CGgGcCGCG-CGCGGCCg- -3'
miRNA:   3'- uUUUUGUaGCgC-GCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 102331 0.67 0.854603
Target:  5'- --uGACGgaggCGCGCGCGcugcuggaCGUGGCCg- -3'
miRNA:   3'- uuuUUGUa---GCGCGCGCa-------GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 58573 0.67 0.854603
Target:  5'- ---cGCcgCcCGCcgGCGUCGCGGCCg- -3'
miRNA:   3'- uuuuUGuaGcGCG--CGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 102932 0.67 0.854603
Target:  5'- gAGGAGCGgcugCGCGCGCuggaCGCGGCg-- -3'
miRNA:   3'- -UUUUUGUa---GCGCGCGca--GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 118438 0.67 0.854603
Target:  5'- cGGAggUGU-GCGCGCGgCuCGGCCUGg -3'
miRNA:   3'- -UUUuuGUAgCGCGCGCaGcGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 29579 0.67 0.854603
Target:  5'- gGAGGACGgaUCGCG-GCGgcuGCGGCCg- -3'
miRNA:   3'- -UUUUUGU--AGCGCgCGCag-CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 64429 0.67 0.854603
Target:  5'- ---cGCucUGCGCGCG-CGUGGCCg- -3'
miRNA:   3'- uuuuUGuaGCGCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 98707 0.67 0.854603
Target:  5'- cGGAGCAgacggCGCGCGCGcUCGUGcaGCCc- -3'
miRNA:   3'- uUUUUGUa----GCGCGCGC-AGCGC--CGGac -5'
29546 5' -55.8 NC_006151.1 + 105560 0.67 0.854603
Target:  5'- --cGACGcccUGCGCGCGcUgGCGGCCg- -3'
miRNA:   3'- uuuUUGUa--GCGCGCGC-AgCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 103748 0.67 0.846584
Target:  5'- --cGGCAgugCGaggaGCGCGcCGCGGCgCUGc -3'
miRNA:   3'- uuuUUGUa--GCg---CGCGCaGCGCCG-GAC- -5'
29546 5' -55.8 NC_006151.1 + 96071 0.67 0.846584
Target:  5'- -cGAGCGagC-CGCGCG-CGCGGCCg- -3'
miRNA:   3'- uuUUUGUa-GcGCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 81853 0.67 0.841676
Target:  5'- cGAGAGCAg-GCGCGCGUCGCucucgacgcgcaggaGcGCCg- -3'
miRNA:   3'- -UUUUUGUagCGCGCGCAGCG---------------C-CGGac -5'
29546 5' -55.8 NC_006151.1 + 102099 0.67 0.838365
Target:  5'- gAGGAGCAcguggUCGCGUGCG-CG-GGCCg- -3'
miRNA:   3'- -UUUUUGU-----AGCGCGCGCaGCgCCGGac -5'
29546 5' -55.8 NC_006151.1 + 89317 0.67 0.838365
Target:  5'- -cGAGCAUCGCacGCGCGagCGaGGCCa- -3'
miRNA:   3'- uuUUUGUAGCG--CGCGCa-GCgCCGGac -5'
29546 5' -55.8 NC_006151.1 + 97858 0.67 0.838365
Target:  5'- ---cGCGUCGUcCGCGUUcucgGCGGCCg- -3'
miRNA:   3'- uuuuUGUAGCGcGCGCAG----CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 130336 0.67 0.838365
Target:  5'- gGGGAGC-UCGCGCGC--CGCGGCg-- -3'
miRNA:   3'- -UUUUUGuAGCGCGCGcaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 71753 0.67 0.838365
Target:  5'- cAGAAGCGcCGCGCGUGguccUGCGGCa-- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGCa---GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 131762 0.67 0.838365
Target:  5'- ----cCGUCGCGguCGCGacCGCGGCCg- -3'
miRNA:   3'- uuuuuGUAGCGC--GCGCa-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 111540 0.67 0.829953
Target:  5'- --cGACAUCaugGCGCGCa--GCGGCCg- -3'
miRNA:   3'- uuuUUGUAG---CGCGCGcagCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 89245 0.67 0.829953
Target:  5'- -uGGGCGUCGUgucgaGCGcCGUCGUGGUCg- -3'
miRNA:   3'- uuUUUGUAGCG-----CGC-GCAGCGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.