miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 141890 0.66 0.890782
Target:  5'- -cGGGCAUCGagcuccaccuccaCGCGCccCGCGGCCg- -3'
miRNA:   3'- uuUUUGUAGC-------------GCGCGcaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 136322 0.66 0.887338
Target:  5'- ---uACAaccCGCGCGUGgaccccaaccccaGCGGCCUGg -3'
miRNA:   3'- uuuuUGUa--GCGCGCGCag-----------CGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 59926 0.66 0.884542
Target:  5'- aGAAGGCG-CGCGC-CGUCaGCGGCg-- -3'
miRNA:   3'- -UUUUUGUaGCGCGcGCAG-CGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 112381 0.66 0.884542
Target:  5'- ---cACGUCGaaguCGCGCaG-CGCGGCCUc -3'
miRNA:   3'- uuuuUGUAGC----GCGCG-CaGCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 11867 0.66 0.884542
Target:  5'- ----cCGUCGaCuCGCGUCGCGGCg-- -3'
miRNA:   3'- uuuuuGUAGC-GcGCGCAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 66572 0.66 0.884542
Target:  5'- -uGGACccggCGCucGCGCG-CGCGGCCg- -3'
miRNA:   3'- uuUUUGua--GCG--CGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 140359 0.66 0.883837
Target:  5'- ---cGCAUCGCcCGCGUCgucgagcGCGGCUc- -3'
miRNA:   3'- uuuuUGUAGCGcGCGCAG-------CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 76815 0.66 0.87739
Target:  5'- cGAGGGCGg-GCGCGUaGUgGCGGCCc- -3'
miRNA:   3'- -UUUUUGUagCGCGCG-CAgCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 38568 0.66 0.87739
Target:  5'- aAGAAGCGcCGCGCGCc-CGgGGCCc- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGcaGCgCCGGac -5'
29546 5' -55.8 NC_006151.1 + 73392 0.66 0.87739
Target:  5'- ---cGCAgCGCGgccgcCGCGUaCGCGGCCg- -3'
miRNA:   3'- uuuuUGUaGCGC-----GCGCA-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 130311 0.66 0.870012
Target:  5'- ---cGCGgagCGCGCGCGcCGCGcGCUc- -3'
miRNA:   3'- uuuuUGUa--GCGCGCGCaGCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 118782 0.66 0.870012
Target:  5'- -uGGACGcggUgGCGCGCGgCGCGGCgcacCUGg -3'
miRNA:   3'- uuUUUGU---AgCGCGCGCaGCGCCG----GAC- -5'
29546 5' -55.8 NC_006151.1 + 9384 0.66 0.870012
Target:  5'- aGGGGGCccccCGCGCGgGUCG-GGCCUu -3'
miRNA:   3'- -UUUUUGua--GCGCGCgCAGCgCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 17397 0.66 0.870012
Target:  5'- --cGACGggGCGCGUGgcgCGCGGCa-- -3'
miRNA:   3'- uuuUUGUagCGCGCGCa--GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 74014 0.66 0.870012
Target:  5'- gAGGGGCGUCGUGCGCu---CGGCCa- -3'
miRNA:   3'- -UUUUUGUAGCGCGCGcagcGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 84609 0.66 0.870012
Target:  5'- -cGAACG-CGCGC-CGccgCGCGGCCg- -3'
miRNA:   3'- uuUUUGUaGCGCGcGCa--GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 31013 0.66 0.870012
Target:  5'- gAAGGGgGUCGcCGcCGCGgcccUCGCGGCCc- -3'
miRNA:   3'- -UUUUUgUAGC-GC-GCGC----AGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 104786 0.66 0.870012
Target:  5'- cGGAGCcaUGCGCGCGcUCGUGcGCCg- -3'
miRNA:   3'- uUUUUGuaGCGCGCGC-AGCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 118148 0.67 0.863184
Target:  5'- --cGACGcCGCG-GCGguggcgccgcuggugCGCGGCCUGa -3'
miRNA:   3'- uuuUUGUaGCGCgCGCa--------------GCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 117259 0.67 0.862415
Target:  5'- cGAGGCG-CGgGcCGCG-CGCGGCCg- -3'
miRNA:   3'- uUUUUGUaGCgC-GCGCaGCGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.