miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 81576 0.8 0.223154
Target:  5'- cGGAGCAgggucUCGCGCGCGUCGCcggGGCCg- -3'
miRNA:   3'- uUUUUGU-----AGCGCGCGCAGCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 69636 0.66 0.898151
Target:  5'- --cGGCGUCcCGCGCGU-GCGGCg-- -3'
miRNA:   3'- uuuUUGUAGcGCGCGCAgCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 57413 0.66 0.898151
Target:  5'- cGAAGACGcccUCGCaGCGCagcgucacguccGUCGCGGCg-- -3'
miRNA:   3'- -UUUUUGU---AGCG-CGCG------------CAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 52610 0.66 0.898151
Target:  5'- cGAAGGCGUCGuCGCGCaggaCGGCCg- -3'
miRNA:   3'- -UUUUUGUAGC-GCGCGcagcGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 142322 0.66 0.898151
Target:  5'- uGGGGGCc-CGCGCGC-UCGCGGCg-- -3'
miRNA:   3'- -UUUUUGuaGCGCGCGcAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 127548 0.66 0.898151
Target:  5'- aGGGGGCGUCGU---CGUCGUGGCCg- -3'
miRNA:   3'- -UUUUUGUAGCGcgcGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 106761 0.66 0.898151
Target:  5'- -cGAGCAgcgCGaCGCGCGUgaGCG-CCUGg -3'
miRNA:   3'- uuUUUGUa--GC-GCGCGCAg-CGCcGGAC- -5'
29546 5' -55.8 NC_006151.1 + 104123 0.66 0.898151
Target:  5'- ---uGCGccUGCGCGaCGUgGCGGCCg- -3'
miRNA:   3'- uuuuUGUa-GCGCGC-GCAgCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 97007 0.66 0.898151
Target:  5'- gGGGGACA-CGCGCGCGUgUGCccGCCUu -3'
miRNA:   3'- -UUUUUGUaGCGCGCGCA-GCGc-CGGAc -5'
29546 5' -55.8 NC_006151.1 + 86154 0.66 0.898151
Target:  5'- gGGGAGC-UCGCgcugacGCGCGagaUCGUGGCCg- -3'
miRNA:   3'- -UUUUUGuAGCG------CGCGC---AGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 72294 0.66 0.898151
Target:  5'- --cGGCGUCaCGCGCGUgaUGaCGGCCg- -3'
miRNA:   3'- uuuUUGUAGcGCGCGCA--GC-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 121421 0.66 0.898151
Target:  5'- cGGGGACGUCGCGgggcuCGCG-C-CGGCCUc -3'
miRNA:   3'- -UUUUUGUAGCGC-----GCGCaGcGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 64465 0.66 0.898151
Target:  5'- --uGGCggCGCGCGcCGcCGCGGCg-- -3'
miRNA:   3'- uuuUUGuaGCGCGC-GCaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 33112 0.66 0.898151
Target:  5'- gAGGAAgGUCuggGCGCGUGcCGCgGGCCg- -3'
miRNA:   3'- -UUUUUgUAG---CGCGCGCaGCG-CCGGac -5'
29546 5' -55.8 NC_006151.1 + 105745 0.66 0.898151
Target:  5'- uGAAGCAgCGCGUgGCGgCGCG-CCUGg -3'
miRNA:   3'- uUUUUGUaGCGCG-CGCaGCGCcGGAC- -5'
29546 5' -55.8 NC_006151.1 + 103671 0.66 0.896833
Target:  5'- aGAAGGCggCGCGCGCGgcgggggugcugCGCGccGCCg- -3'
miRNA:   3'- -UUUUUGuaGCGCGCGCa-----------GCGC--CGGac -5'
29546 5' -55.8 NC_006151.1 + 59165 0.66 0.891464
Target:  5'- --cGGCGUCGCGCaGCaG-CGCGGCg-- -3'
miRNA:   3'- uuuUUGUAGCGCG-CG-CaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 131129 0.66 0.891464
Target:  5'- gGGAGGC--CGCG-GCGcCGCGGCCg- -3'
miRNA:   3'- -UUUUUGuaGCGCgCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 104642 0.66 0.891464
Target:  5'- --uGACGUa-CGUGCG-CGCGGCCg- -3'
miRNA:   3'- uuuUUGUAgcGCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 129873 0.66 0.891464
Target:  5'- --uGGCGUCGCGCGC--CGCcGCCa- -3'
miRNA:   3'- uuuUUGUAGCGCGCGcaGCGcCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.