miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 52176 0.75 0.417957
Target:  5'- gAAGGGCG-CGCGCGCGaaCGCGGCCc- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGCa-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 52610 0.66 0.898151
Target:  5'- cGAAGGCGUCGuCGCGCaggaCGGCCg- -3'
miRNA:   3'- -UUUUUGUAGC-GCGCGcagcGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 53344 0.7 0.676218
Target:  5'- cGGGGCG-CGCGCGCGcCGCGuaCUGc -3'
miRNA:   3'- uUUUUGUaGCGCGCGCaGCGCcgGAC- -5'
29546 5' -55.8 NC_006151.1 + 53977 0.7 0.706937
Target:  5'- --cGGCGccucCGCGgGCGUCGCGGCgaGc -3'
miRNA:   3'- uuuUUGUa---GCGCgCGCAGCGCCGgaC- -5'
29546 5' -55.8 NC_006151.1 + 54390 0.73 0.52209
Target:  5'- ---cGCAccUGCGCGCG-CGCGGCCUc -3'
miRNA:   3'- uuuuUGUa-GCGCGCGCaGCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 54510 0.77 0.305454
Target:  5'- -uGGACuUUGUGCGCGgcaUCGCGGCCUGc -3'
miRNA:   3'- uuUUUGuAGCGCGCGC---AGCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 55872 0.69 0.717059
Target:  5'- --cGAgAUCGCgGCGCuGUCGCGGCg-- -3'
miRNA:   3'- uuuUUgUAGCG-CGCG-CAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 56030 0.67 0.829953
Target:  5'- --uGACugaCGCGCGCGUCgaggGCGGCgcgCUGa -3'
miRNA:   3'- uuuUUGua-GCGCGCGCAG----CGCCG---GAC- -5'
29546 5' -55.8 NC_006151.1 + 57224 0.72 0.562471
Target:  5'- cGAGGcCGUCGCaggcgGCGCG-CGCGGCCUc -3'
miRNA:   3'- -UUUUuGUAGCG-----CGCGCaGCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 57254 0.67 0.829953
Target:  5'- --cGGCGUC-CGCGCGgcccUCGaCGGCCUc -3'
miRNA:   3'- uuuUUGUAGcGCGCGC----AGC-GCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 57288 0.66 0.890782
Target:  5'- cAGGGCGUCcaGCGCggccuugGCGgCGCGGCCg- -3'
miRNA:   3'- uUUUUGUAG--CGCG-------CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 57413 0.66 0.898151
Target:  5'- cGAAGACGcccUCGCaGCGCagcgucacguccGUCGCGGCg-- -3'
miRNA:   3'- -UUUUUGU---AGCG-CGCG------------CAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 57885 0.69 0.756702
Target:  5'- -cAGACGUCGCaGCGCaggCGCaGGCCg- -3'
miRNA:   3'- uuUUUGUAGCG-CGCGca-GCG-CCGGac -5'
29546 5' -55.8 NC_006151.1 + 58130 0.71 0.634779
Target:  5'- ---cGCGUCGCccGCGcCGUaCGCGGCCg- -3'
miRNA:   3'- uuuuUGUAGCG--CGC-GCA-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 58454 0.71 0.603646
Target:  5'- ---cGCG-CGCGCgGCGUCGCGGUCc- -3'
miRNA:   3'- uuuuUGUaGCGCG-CGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 58573 0.67 0.854603
Target:  5'- ---cGCcgCcCGCcgGCGUCGCGGCCg- -3'
miRNA:   3'- uuuuUGuaGcGCG--CGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 58739 0.79 0.228751
Target:  5'- ---cGCGUCGCGCaGCGcCGCGGCCa- -3'
miRNA:   3'- uuuuUGUAGCGCG-CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 59165 0.66 0.891464
Target:  5'- --cGGCGUCGCGCaGCaG-CGCGGCg-- -3'
miRNA:   3'- uuuUUGUAGCGCG-CG-CaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 59352 0.68 0.785279
Target:  5'- cAGGGCcgCGCGCacgggGCGccgCGCGGCCg- -3'
miRNA:   3'- uUUUUGuaGCGCG-----CGCa--GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 59890 0.71 0.634779
Target:  5'- cGAAGGCGUCcagGCGCGCGUCGCGcagaaaGUCg- -3'
miRNA:   3'- -UUUUUGUAG---CGCGCGCAGCGC------CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.