miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 4160 0.72 0.582986
Target:  5'- ---cGCGUCGCggaGCGCGagcagCGCGGCCg- -3'
miRNA:   3'- uuuuUGUAGCG---CGCGCa----GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 4796 0.69 0.737069
Target:  5'- ---cGCggCGCGguaGCGggcCGCGGCCUGg -3'
miRNA:   3'- uuuuUGuaGCGCg--CGCa--GCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 9384 0.66 0.870012
Target:  5'- aGGGGGCccccCGCGCGgGUCG-GGCCUu -3'
miRNA:   3'- -UUUUUGua--GCGCGCgCAGCgCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 11867 0.66 0.884542
Target:  5'- ----cCGUCGaCuCGCGUCGCGGCg-- -3'
miRNA:   3'- uuuuuGUAGC-GcGCGCAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 11896 0.68 0.803637
Target:  5'- ---cGCAUCGagGCGCGUCGgGGUUUu -3'
miRNA:   3'- uuuuUGUAGCg-CGCGCAGCgCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 17397 0.66 0.870012
Target:  5'- --cGACGggGCGCGUGgcgCGCGGCa-- -3'
miRNA:   3'- uuuUUGUagCGCGCGCa--GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 20170 0.71 0.614012
Target:  5'- -cGGGCcgCGCcCGgGUCGCGGCCg- -3'
miRNA:   3'- uuUUUGuaGCGcGCgCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 24674 0.7 0.706937
Target:  5'- --cGGCGUCGCGCaUGUCcaGCGGCCc- -3'
miRNA:   3'- uuuUUGUAGCGCGcGCAG--CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 24961 0.71 0.624392
Target:  5'- --uGACGaUGCGCGC--CGCGGCCUGc -3'
miRNA:   3'- uuuUUGUaGCGCGCGcaGCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 27094 0.7 0.695728
Target:  5'- ---cGCAgggCGCGCGUGUCgcccgucacgucgGCGGCCg- -3'
miRNA:   3'- uuuuUGUa--GCGCGCGCAG-------------CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 29579 0.67 0.854603
Target:  5'- gGAGGACGgaUCGCG-GCGgcuGCGGCCg- -3'
miRNA:   3'- -UUUUUGU--AGCGCgCGCag-CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 31013 0.66 0.870012
Target:  5'- gAAGGGgGUCGcCGcCGCGgcccUCGCGGCCc- -3'
miRNA:   3'- -UUUUUgUAGC-GC-GCGC----AGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 33112 0.66 0.898151
Target:  5'- gAGGAAgGUCuggGCGCGUGcCGCgGGCCg- -3'
miRNA:   3'- -UUUUUgUAG---CGCGCGCaGCG-CCGGac -5'
29546 5' -55.8 NC_006151.1 + 35140 0.68 0.794533
Target:  5'- ----uCAUUG-GCGCGcCGCGGCCa- -3'
miRNA:   3'- uuuuuGUAGCgCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 38568 0.66 0.87739
Target:  5'- aAGAAGCGcCGCGCGCc-CGgGGCCc- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGcaGCgCCGGac -5'
29546 5' -55.8 NC_006151.1 + 38993 0.73 0.492556
Target:  5'- ---cACAUCGcCGCGCGcCGCGGCg-- -3'
miRNA:   3'- uuuuUGUAGC-GCGCGCaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 50011 0.71 0.634779
Target:  5'- ---cGCcgCGCGCGCGgcccgCGCGGCg-- -3'
miRNA:   3'- uuuuUGuaGCGCGCGCa----GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 50263 0.69 0.756702
Target:  5'- -uGAGCAccuUCGgaCGCGCGUcCGUGGCCa- -3'
miRNA:   3'- uuUUUGU---AGC--GCGCGCA-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 50425 0.69 0.756702
Target:  5'- aGGAGGCGccccUGCGCGCcg-GCGGCCUGg -3'
miRNA:   3'- -UUUUUGUa---GCGCGCGcagCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 51404 0.71 0.634779
Target:  5'- cGAGcGCGUCGCaGCGCGUgcacccgucCGUGGCCa- -3'
miRNA:   3'- -UUUuUGUAGCG-CGCGCA---------GCGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.