miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 142322 0.66 0.898151
Target:  5'- uGGGGGCc-CGCGCGC-UCGCGGCg-- -3'
miRNA:   3'- -UUUUUGuaGCGCGCGcAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 141890 0.66 0.890782
Target:  5'- -cGGGCAUCGagcuccaccuccaCGCGCccCGCGGCCg- -3'
miRNA:   3'- uuUUUGUAGC-------------GCGCGcaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 140359 0.66 0.883837
Target:  5'- ---cGCAUCGCcCGCGUCgucgagcGCGGCUc- -3'
miRNA:   3'- uuuuUGUAGCGcGCGCAG-------CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 139234 0.74 0.435973
Target:  5'- ---cACAUCGCGCGCGUCuccggcgcGaCGGCCa- -3'
miRNA:   3'- uuuuUGUAGCGCGCGCAG--------C-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 138529 0.67 0.829953
Target:  5'- cGGGGugAUgG-GCGCGUaCGcCGGCCUGg -3'
miRNA:   3'- -UUUUugUAgCgCGCGCA-GC-GCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 138149 0.67 0.821355
Target:  5'- gGAGGACcggCGCGCGC-UCGaGGCCUu -3'
miRNA:   3'- -UUUUUGua-GCGCGCGcAGCgCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 136800 0.68 0.775882
Target:  5'- ---cACGUaCGcCGCGC-UCGCGGCCg- -3'
miRNA:   3'- uuuuUGUA-GC-GCGCGcAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 136748 0.77 0.320007
Target:  5'- -cGAGCGUCGCGCGCcUCGCcccGGCCa- -3'
miRNA:   3'- uuUUUGUAGCGCGCGcAGCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 136322 0.66 0.887338
Target:  5'- ---uACAaccCGCGCGUGgaccccaaccccaGCGGCCUGg -3'
miRNA:   3'- uuuuUGUa--GCGCGCGCag-----------CGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 135112 0.68 0.803637
Target:  5'- --cGGCGguaGCGCGCGggGCGGgCUGg -3'
miRNA:   3'- uuuUUGUag-CGCGCGCagCGCCgGAC- -5'
29546 5' -55.8 NC_006151.1 + 134754 0.74 0.463813
Target:  5'- -cGAGCAgCGCGCGCGgggccCGCGGCUUc -3'
miRNA:   3'- uuUUUGUaGCGCGCGCa----GCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 132368 0.69 0.717059
Target:  5'- aGGGGGCcaggCGCGCGaCGUCGCGGUa-- -3'
miRNA:   3'- -UUUUUGua--GCGCGC-GCAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 132324 0.71 0.603646
Target:  5'- cGAGAGC-UCGCGCGC--CGUGGCCa- -3'
miRNA:   3'- -UUUUUGuAGCGCGCGcaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 131762 0.67 0.838365
Target:  5'- ----cCGUCGCGguCGCGacCGCGGCCg- -3'
miRNA:   3'- uuuuuGUAGCGC--GCGCa-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 131129 0.66 0.891464
Target:  5'- gGGAGGC--CGCG-GCGcCGCGGCCg- -3'
miRNA:   3'- -UUUUUGuaGCGCgCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 130365 0.7 0.655537
Target:  5'- --uGACGgcCGCGCGCGcCGCGGCg-- -3'
miRNA:   3'- uuuUUGUa-GCGCGCGCaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 130336 0.67 0.838365
Target:  5'- gGGGAGC-UCGCGCGC--CGCGGCg-- -3'
miRNA:   3'- -UUUUUGuAGCGCGCGcaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 130311 0.66 0.870012
Target:  5'- ---cGCGgagCGCGCGCGcCGCGcGCUc- -3'
miRNA:   3'- uuuuUGUa--GCGCGCGCaGCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 130282 0.69 0.737069
Target:  5'- cGAGGCcgCGgGCGCG-CGCcGGCCg- -3'
miRNA:   3'- uUUUUGuaGCgCGCGCaGCG-CCGGac -5'
29546 5' -55.8 NC_006151.1 + 130012 0.68 0.793615
Target:  5'- cGAGACggCGCGCGCcacggccGUCGUGaGCCa- -3'
miRNA:   3'- uUUUUGuaGCGCGCG-------CAGCGC-CGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.