Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29546 | 5' | -55.8 | NC_006151.1 | + | 129873 | 0.66 | 0.891464 |
Target: 5'- --uGGCGUCGCGCGC--CGCcGCCa- -3' miRNA: 3'- uuuUUGUAGCGCGCGcaGCGcCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 129031 | 0.68 | 0.785279 |
Target: 5'- --cGGCcgCGCGCGCGUacaccucgcggUGCGGCUc- -3' miRNA: 3'- uuuUUGuaGCGCGCGCA-----------GCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 128586 | 0.67 | 0.821355 |
Target: 5'- --cGACAUCGUcucGCGCGgccCGCGcGCCa- -3' miRNA: 3'- uuuUUGUAGCG---CGCGCa--GCGC-CGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 127837 | 0.71 | 0.614012 |
Target: 5'- ---uACGUgGCG-GCGUCGCGGCUg- -3' miRNA: 3'- uuuuUGUAgCGCgCGCAGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 127548 | 0.66 | 0.898151 |
Target: 5'- aGGGGGCGUCGU---CGUCGUGGCCg- -3' miRNA: 3'- -UUUUUGUAGCGcgcGCAGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 125442 | 0.7 | 0.655537 |
Target: 5'- cGAGAUGUCGCGCcugaaccccaGCGcCGUGGCCa- -3' miRNA: 3'- uUUUUGUAGCGCG----------CGCaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 125199 | 0.68 | 0.794533 |
Target: 5'- --cGGCGUCGUGgGCccCGCGGCCc- -3' miRNA: 3'- uuuUUGUAGCGCgCGcaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 122775 | 0.68 | 0.775882 |
Target: 5'- -cGGGCugcUCGUGgGCGgcugCGCGGCCUc -3' miRNA: 3'- uuUUUGu--AGCGCgCGCa---GCGCCGGAc -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 121421 | 0.66 | 0.898151 |
Target: 5'- cGGGGACGUCGCGgggcuCGCG-C-CGGCCUc -3' miRNA: 3'- -UUUUUGUAGCGC-----GCGCaGcGCCGGAc -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 120332 | 0.73 | 0.502318 |
Target: 5'- -cGGACGcCGCGCGCGcccgCGUGGCCg- -3' miRNA: 3'- uuUUUGUaGCGCGCGCa---GCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 118782 | 0.66 | 0.870012 |
Target: 5'- -uGGACGcggUgGCGCGCGgCGCGGCgcacCUGg -3' miRNA: 3'- uuUUUGU---AgCGCGCGCaGCGCCG----GAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 118438 | 0.67 | 0.854603 |
Target: 5'- cGGAggUGU-GCGCGCGgCuCGGCCUGg -3' miRNA: 3'- -UUUuuGUAgCGCGCGCaGcGCCGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 118148 | 0.67 | 0.863184 |
Target: 5'- --cGACGcCGCG-GCGguggcgccgcuggugCGCGGCCUGa -3' miRNA: 3'- uuuUUGUaGCGCgCGCa--------------GCGCCGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 117259 | 0.67 | 0.862415 |
Target: 5'- cGAGGCG-CGgGcCGCG-CGCGGCCg- -3' miRNA: 3'- uUUUUGUaGCgC-GCGCaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115632 | 0.73 | 0.52209 |
Target: 5'- -----aGUCGCGCGUggccaccagcauGUCGCGGCCg- -3' miRNA: 3'- uuuuugUAGCGCGCG------------CAGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115596 | 0.67 | 0.862415 |
Target: 5'- -cGAGCAgcUCGCGCGUGgcccaGCGcGUCUGc -3' miRNA: 3'- uuUUUGU--AGCGCGCGCag---CGC-CGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115437 | 0.79 | 0.228751 |
Target: 5'- gGAAGAgGUCGCGCGUGaugcgCGCGGCCa- -3' miRNA: 3'- -UUUUUgUAGCGCGCGCa----GCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115209 | 0.76 | 0.350651 |
Target: 5'- -cGGGCG-CGCGCGCGaUCGUGGCCg- -3' miRNA: 3'- uuUUUGUaGCGCGCGC-AGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115125 | 0.69 | 0.737069 |
Target: 5'- --cGGCGaCGCGCGCGUgCGCcucGGCCa- -3' miRNA: 3'- uuuUUGUaGCGCGCGCA-GCG---CCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 113064 | 0.7 | 0.706937 |
Target: 5'- cGAGGACGaCGCGUacgaGCG-CGCGGCCg- -3' miRNA: 3'- -UUUUUGUaGCGCG----CGCaGCGCCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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