miRNA display CGI


Results 21 - 40 of 155 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 129873 0.66 0.891464
Target:  5'- --uGGCGUCGCGCGC--CGCcGCCa- -3'
miRNA:   3'- uuuUUGUAGCGCGCGcaGCGcCGGac -5'
29546 5' -55.8 NC_006151.1 + 129031 0.68 0.785279
Target:  5'- --cGGCcgCGCGCGCGUacaccucgcggUGCGGCUc- -3'
miRNA:   3'- uuuUUGuaGCGCGCGCA-----------GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 128586 0.67 0.821355
Target:  5'- --cGACAUCGUcucGCGCGgccCGCGcGCCa- -3'
miRNA:   3'- uuuUUGUAGCG---CGCGCa--GCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 127837 0.71 0.614012
Target:  5'- ---uACGUgGCG-GCGUCGCGGCUg- -3'
miRNA:   3'- uuuuUGUAgCGCgCGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 127548 0.66 0.898151
Target:  5'- aGGGGGCGUCGU---CGUCGUGGCCg- -3'
miRNA:   3'- -UUUUUGUAGCGcgcGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 125442 0.7 0.655537
Target:  5'- cGAGAUGUCGCGCcugaaccccaGCGcCGUGGCCa- -3'
miRNA:   3'- uUUUUGUAGCGCG----------CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 125199 0.68 0.794533
Target:  5'- --cGGCGUCGUGgGCccCGCGGCCc- -3'
miRNA:   3'- uuuUUGUAGCGCgCGcaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 122775 0.68 0.775882
Target:  5'- -cGGGCugcUCGUGgGCGgcugCGCGGCCUc -3'
miRNA:   3'- uuUUUGu--AGCGCgCGCa---GCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 121421 0.66 0.898151
Target:  5'- cGGGGACGUCGCGgggcuCGCG-C-CGGCCUc -3'
miRNA:   3'- -UUUUUGUAGCGC-----GCGCaGcGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 120332 0.73 0.502318
Target:  5'- -cGGACGcCGCGCGCGcccgCGUGGCCg- -3'
miRNA:   3'- uuUUUGUaGCGCGCGCa---GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 118782 0.66 0.870012
Target:  5'- -uGGACGcggUgGCGCGCGgCGCGGCgcacCUGg -3'
miRNA:   3'- uuUUUGU---AgCGCGCGCaGCGCCG----GAC- -5'
29546 5' -55.8 NC_006151.1 + 118438 0.67 0.854603
Target:  5'- cGGAggUGU-GCGCGCGgCuCGGCCUGg -3'
miRNA:   3'- -UUUuuGUAgCGCGCGCaGcGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 118148 0.67 0.863184
Target:  5'- --cGACGcCGCG-GCGguggcgccgcuggugCGCGGCCUGa -3'
miRNA:   3'- uuuUUGUaGCGCgCGCa--------------GCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 117259 0.67 0.862415
Target:  5'- cGAGGCG-CGgGcCGCG-CGCGGCCg- -3'
miRNA:   3'- uUUUUGUaGCgC-GCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 115632 0.73 0.52209
Target:  5'- -----aGUCGCGCGUggccaccagcauGUCGCGGCCg- -3'
miRNA:   3'- uuuuugUAGCGCGCG------------CAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 115596 0.67 0.862415
Target:  5'- -cGAGCAgcUCGCGCGUGgcccaGCGcGUCUGc -3'
miRNA:   3'- uuUUUGU--AGCGCGCGCag---CGC-CGGAC- -5'
29546 5' -55.8 NC_006151.1 + 115437 0.79 0.228751
Target:  5'- gGAAGAgGUCGCGCGUGaugcgCGCGGCCa- -3'
miRNA:   3'- -UUUUUgUAGCGCGCGCa----GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 115209 0.76 0.350651
Target:  5'- -cGGGCG-CGCGCGCGaUCGUGGCCg- -3'
miRNA:   3'- uuUUUGUaGCGCGCGC-AGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 115125 0.69 0.737069
Target:  5'- --cGGCGaCGCGCGCGUgCGCcucGGCCa- -3'
miRNA:   3'- uuuUUGUaGCGCGCGCA-GCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 113064 0.7 0.706937
Target:  5'- cGAGGACGaCGCGUacgaGCG-CGCGGCCg- -3'
miRNA:   3'- -UUUUUGUaGCGCG----CGCaGCGCCGGac -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.