miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 112976 0.73 0.532089
Target:  5'- -cGGACG-CGCGCGCGcCGCcGaGCCUGg -3'
miRNA:   3'- uuUUUGUaGCGCGCGCaGCG-C-CGGAC- -5'
29546 5' -55.8 NC_006151.1 + 75449 0.72 0.542156
Target:  5'- --cGGCGUgGCGCGCGUaGCGGUCg- -3'
miRNA:   3'- uuuUUGUAgCGCGCGCAgCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 57224 0.72 0.562471
Target:  5'- cGAGGcCGUCGCaggcgGCGCG-CGCGGCCUc -3'
miRNA:   3'- -UUUUuGUAGCG-----CGCGCaGCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 84424 0.72 0.562471
Target:  5'- uAAGGCggCGCGCgGCGgcgCGCGGCCc- -3'
miRNA:   3'- uUUUUGuaGCGCG-CGCa--GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 4160 0.72 0.582986
Target:  5'- ---cGCGUCGCggaGCGCGagcagCGCGGCCg- -3'
miRNA:   3'- uuuuUGUAGCG---CGCGCa----GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 76698 0.72 0.593301
Target:  5'- gAGAGugGcgCGgGCGCGcCGCGGCCg- -3'
miRNA:   3'- -UUUUugUa-GCgCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 91527 0.71 0.603646
Target:  5'- uGAAGACGaggaaggCGUGCGCGaggugCGCGGCCa- -3'
miRNA:   3'- -UUUUUGUa------GCGCGCGCa----GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 132324 0.71 0.603646
Target:  5'- cGAGAGC-UCGCGCGC--CGUGGCCa- -3'
miRNA:   3'- -UUUUUGuAGCGCGCGcaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 58454 0.71 0.603646
Target:  5'- ---cGCG-CGCGCgGCGUCGCGGUCc- -3'
miRNA:   3'- uuuuUGUaGCGCG-CGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 71044 0.71 0.614012
Target:  5'- ---cGCGcCGCGCGCGUCGUcGCCg- -3'
miRNA:   3'- uuuuUGUaGCGCGCGCAGCGcCGGac -5'
29546 5' -55.8 NC_006151.1 + 127837 0.71 0.614012
Target:  5'- ---uACGUgGCG-GCGUCGCGGCUg- -3'
miRNA:   3'- uuuuUGUAgCGCgCGCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 20170 0.71 0.614012
Target:  5'- -cGGGCcgCGCcCGgGUCGCGGCCg- -3'
miRNA:   3'- uuUUUGuaGCGcGCgCAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 24961 0.71 0.624392
Target:  5'- --uGACGaUGCGCGC--CGCGGCCUGc -3'
miRNA:   3'- uuuUUGUaGCGCGCGcaGCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 50011 0.71 0.634779
Target:  5'- ---cGCcgCGCGCGCGgcccgCGCGGCg-- -3'
miRNA:   3'- uuuuUGuaGCGCGCGCa----GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 59890 0.71 0.634779
Target:  5'- cGAAGGCGUCcagGCGCGCGUCGCGcagaaaGUCg- -3'
miRNA:   3'- -UUUUUGUAG---CGCGCGCAGCGC------CGGac -5'
29546 5' -55.8 NC_006151.1 + 58130 0.71 0.634779
Target:  5'- ---cGCGUCGCccGCGcCGUaCGCGGCCg- -3'
miRNA:   3'- uuuuUGUAGCG--CGC-GCA-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 51404 0.71 0.634779
Target:  5'- cGAGcGCGUCGCaGCGCGUgcacccgucCGUGGCCa- -3'
miRNA:   3'- -UUUuUGUAGCG-CGCGCA---------GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 105437 0.71 0.645163
Target:  5'- cGAGAGCAaguacUCgGCGCGCGcCGgGGcCCUGg -3'
miRNA:   3'- -UUUUUGU-----AG-CGCGCGCaGCgCC-GGAC- -5'
29546 5' -55.8 NC_006151.1 + 130365 0.7 0.655537
Target:  5'- --uGACGgcCGCGCGCGcCGCGGCg-- -3'
miRNA:   3'- uuuUUGUa-GCGCGCGCaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 125442 0.7 0.655537
Target:  5'- cGAGAUGUCGCGCcugaaccccaGCGcCGUGGCCa- -3'
miRNA:   3'- uUUUUGUAGCGCG----------CGCaGCGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.