miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 62081 0.7 0.676218
Target:  5'- -cGAACGUCGUccucgGCGCGgu-CGGCCUGg -3'
miRNA:   3'- uuUUUGUAGCG-----CGCGCagcGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 53344 0.7 0.676218
Target:  5'- cGGGGCG-CGCGCGCGcCGCGuaCUGc -3'
miRNA:   3'- uUUUUGUaGCGCGCGCaGCGCcgGAC- -5'
29546 5' -55.8 NC_006151.1 + 27094 0.7 0.695728
Target:  5'- ---cGCAgggCGCGCGUGUCgcccgucacgucgGCGGCCg- -3'
miRNA:   3'- uuuuUGUa--GCGCGCGCAG-------------CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 102544 0.7 0.69675
Target:  5'- -cGGugGUgGCGCGCG-CGCGGgcCCUGu -3'
miRNA:   3'- uuUUugUAgCGCGCGCaGCGCC--GGAC- -5'
29546 5' -55.8 NC_006151.1 + 102691 0.7 0.69675
Target:  5'- cGGGGGCGcccggCGCGgGCGgCGCGGCCg- -3'
miRNA:   3'- -UUUUUGUa----GCGCgCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 75212 0.7 0.706937
Target:  5'- cGAGGGCGUCgGgGCGCG-CGuCGGCCa- -3'
miRNA:   3'- -UUUUUGUAG-CgCGCGCaGC-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 53977 0.7 0.706937
Target:  5'- --cGGCGccucCGCGgGCGUCGCGGCgaGc -3'
miRNA:   3'- uuuUUGUa---GCGCgCGCAGCGCCGgaC- -5'
29546 5' -55.8 NC_006151.1 + 24674 0.7 0.706937
Target:  5'- --cGGCGUCGCGCaUGUCcaGCGGCCc- -3'
miRNA:   3'- uuuUUGUAGCGCGcGCAG--CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 113064 0.7 0.706937
Target:  5'- cGAGGACGaCGCGUacgaGCG-CGCGGCCg- -3'
miRNA:   3'- -UUUUUGUaGCGCG----CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 132368 0.69 0.717059
Target:  5'- aGGGGGCcaggCGCGCGaCGUCGCGGUa-- -3'
miRNA:   3'- -UUUUUGua--GCGCGC-GCAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 55872 0.69 0.717059
Target:  5'- --cGAgAUCGCgGCGCuGUCGCGGCg-- -3'
miRNA:   3'- uuuUUgUAGCG-CGCG-CAGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 130282 0.69 0.737069
Target:  5'- cGAGGCcgCGgGCGCG-CGCcGGCCg- -3'
miRNA:   3'- uUUUUGuaGCgCGCGCaGCG-CCGGac -5'
29546 5' -55.8 NC_006151.1 + 4796 0.69 0.737069
Target:  5'- ---cGCggCGCGguaGCGggcCGCGGCCUGg -3'
miRNA:   3'- uuuuUGuaGCGCg--CGCa--GCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 115125 0.69 0.737069
Target:  5'- --cGGCGaCGCGCGCGUgCGCcucGGCCa- -3'
miRNA:   3'- uuuUUGUaGCGCGCGCA-GCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 88385 0.69 0.737069
Target:  5'- cGAGcGCGUcCGCG-GCGUcCGCGGCCg- -3'
miRNA:   3'- -UUUuUGUA-GCGCgCGCA-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 102724 0.69 0.737069
Target:  5'- -cGAACA-CGCGCGaCGUCaaggagcgcGCGGCCa- -3'
miRNA:   3'- uuUUUGUaGCGCGC-GCAG---------CGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 99549 0.69 0.746937
Target:  5'- cGGAGCAcgugggCGCgGCGCG-CGCGGCgCUGc -3'
miRNA:   3'- uUUUUGUa-----GCG-CGCGCaGCGCCG-GAC- -5'
29546 5' -55.8 NC_006151.1 + 65716 0.69 0.746937
Target:  5'- aGGGGGCcUCGCGCggcuGCG-CGCGGCCc- -3'
miRNA:   3'- -UUUUUGuAGCGCG----CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 95286 0.69 0.746937
Target:  5'- cGAAGACGgcgGCGaCGCG-CGCGGCCc- -3'
miRNA:   3'- -UUUUUGUag-CGC-GCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 68767 0.69 0.750856
Target:  5'- --cGGCGguggCGCGCGCGgcgaggugcgccgcCGCGGCCg- -3'
miRNA:   3'- uuuUUGUa---GCGCGCGCa-------------GCGCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.