miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 59926 0.66 0.884542
Target:  5'- aGAAGGCG-CGCGC-CGUCaGCGGCg-- -3'
miRNA:   3'- -UUUUUGUaGCGCGcGCAG-CGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 62081 0.7 0.676218
Target:  5'- -cGAACGUCGUccucgGCGCGgu-CGGCCUGg -3'
miRNA:   3'- uuUUUGUAGCG-----CGCGCagcGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 63693 0.68 0.775882
Target:  5'- --cGACugggCGUGCGCGuUCGCGGCg-- -3'
miRNA:   3'- uuuUUGua--GCGCGCGC-AGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 63904 0.68 0.81258
Target:  5'- -cGAGCAg-GCGCGCGUacgCGCGcGCCg- -3'
miRNA:   3'- uuUUUGUagCGCGCGCA---GCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 64429 0.67 0.854603
Target:  5'- ---cGCucUGCGCGCG-CGUGGCCg- -3'
miRNA:   3'- uuuuUGuaGCGCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 64465 0.66 0.898151
Target:  5'- --uGGCggCGCGCGcCGcCGCGGCg-- -3'
miRNA:   3'- uuuUUGuaGCGCGC-GCaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 65716 0.69 0.746937
Target:  5'- aGGGGGCcUCGCGCggcuGCG-CGCGGCCc- -3'
miRNA:   3'- -UUUUUGuAGCGCG----CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 66572 0.66 0.884542
Target:  5'- -uGGACccggCGCucGCGCG-CGCGGCCg- -3'
miRNA:   3'- uuUUUGua--GCG--CGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 68767 0.69 0.750856
Target:  5'- --cGGCGguggCGCGCGCGgcgaggugcgccgcCGCGGCCg- -3'
miRNA:   3'- uuuUUGUa---GCGCGCGCa-------------GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 69636 0.66 0.898151
Target:  5'- --cGGCGUCcCGCGCGU-GCGGCg-- -3'
miRNA:   3'- uuuUUGUAGcGCGCGCAgCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 70890 0.74 0.454428
Target:  5'- cGAGAUcgCGCGCuGCGUCGUGcgcuGCCUGg -3'
miRNA:   3'- uUUUUGuaGCGCG-CGCAGCGC----CGGAC- -5'
29546 5' -55.8 NC_006151.1 + 71044 0.71 0.614012
Target:  5'- ---cGCGcCGCGCGCGUCGUcGCCg- -3'
miRNA:   3'- uuuuUGUaGCGCGCGCAGCGcCGGac -5'
29546 5' -55.8 NC_006151.1 + 71753 0.67 0.838365
Target:  5'- cAGAAGCGcCGCGCGUGguccUGCGGCa-- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGCa---GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 72294 0.66 0.898151
Target:  5'- --cGGCGUCaCGCGCGUgaUGaCGGCCg- -3'
miRNA:   3'- uuuUUGUAGcGCGCGCA--GC-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 72374 0.75 0.409121
Target:  5'- --cGACcUCGCGCaGCGUCGCGuGCCg- -3'
miRNA:   3'- uuuUUGuAGCGCG-CGCAGCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 73392 0.66 0.87739
Target:  5'- ---cGCAgCGCGgccgcCGCGUaCGCGGCCg- -3'
miRNA:   3'- uuuuUGUaGCGC-----GCGCA-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 74014 0.66 0.870012
Target:  5'- gAGGGGCGUCGUGCGCu---CGGCCa- -3'
miRNA:   3'- -UUUUUGUAGCGCGCGcagcGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 74733 0.68 0.81258
Target:  5'- --cGGCGUUGUGCGUGUUGC-GCCa- -3'
miRNA:   3'- uuuUUGUAGCGCGCGCAGCGcCGGac -5'
29546 5' -55.8 NC_006151.1 + 74855 0.68 0.81258
Target:  5'- --uGGCGUCGCGgaaggcgcCGCGcacCGCGGCCa- -3'
miRNA:   3'- uuuUUGUAGCGC--------GCGCa--GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 75212 0.7 0.706937
Target:  5'- cGAGGGCGUCgGgGCGCG-CGuCGGCCa- -3'
miRNA:   3'- -UUUUUGUAG-CgCGCGCaGC-GCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.