miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 5' -55.8 NC_006151.1 + 81576 0.8 0.223154
Target:  5'- cGGAGCAgggucUCGCGCGCGUCGCcggGGCCg- -3'
miRNA:   3'- uUUUUGU-----AGCGCGCGCAGCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 58739 0.79 0.228751
Target:  5'- ---cGCGUCGCGCaGCGcCGCGGCCa- -3'
miRNA:   3'- uuuuUGUAGCGCG-CGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 115437 0.79 0.228751
Target:  5'- gGAAGAgGUCGCGCGUGaugcgCGCGGCCa- -3'
miRNA:   3'- -UUUUUgUAGCGCGCGCa----GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 111270 0.78 0.26486
Target:  5'- cGGGAACcgCGCGgGCGggggguaCGCGGCCUGg -3'
miRNA:   3'- -UUUUUGuaGCGCgCGCa------GCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 54510 0.77 0.305454
Target:  5'- -uGGACuUUGUGCGCGgcaUCGCGGCCUGc -3'
miRNA:   3'- uuUUUGuAGCGCGCGC---AGCGCCGGAC- -5'
29546 5' -55.8 NC_006151.1 + 136748 0.77 0.320007
Target:  5'- -cGAGCGUCGCGCGCcUCGCcccGGCCa- -3'
miRNA:   3'- uuUUUGUAGCGCGCGcAGCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 115209 0.76 0.350651
Target:  5'- -cGGGCG-CGCGCGCGaUCGUGGCCg- -3'
miRNA:   3'- uuUUUGUaGCGCGCGC-AGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 92136 0.75 0.383324
Target:  5'- ---cGCAUCGCGCGCGgCGCcaaGGCCa- -3'
miRNA:   3'- uuuuUGUAGCGCGCGCaGCG---CCGGac -5'
29546 5' -55.8 NC_006151.1 + 72374 0.75 0.409121
Target:  5'- --cGACcUCGCGCaGCGUCGCGuGCCg- -3'
miRNA:   3'- uuuUUGuAGCGCG-CGCAGCGC-CGGac -5'
29546 5' -55.8 NC_006151.1 + 52176 0.75 0.417957
Target:  5'- gAAGGGCG-CGCGCGCGaaCGCGGCCc- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGCa-GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 139234 0.74 0.435973
Target:  5'- ---cACAUCGCGCGCGUCuccggcgcGaCGGCCa- -3'
miRNA:   3'- uuuuUGUAGCGCGCGCAG--------C-GCCGGac -5'
29546 5' -55.8 NC_006151.1 + 103290 0.74 0.445147
Target:  5'- aGGAGACG-CGCGCGCGgcucgCGCGGCg-- -3'
miRNA:   3'- -UUUUUGUaGCGCGCGCa----GCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 70890 0.74 0.454428
Target:  5'- cGAGAUcgCGCGCuGCGUCGUGcgcuGCCUGg -3'
miRNA:   3'- uUUUUGuaGCGCG-CGCAGCGC----CGGAC- -5'
29546 5' -55.8 NC_006151.1 + 134754 0.74 0.463813
Target:  5'- -cGAGCAgCGCGCGCGgggccCGCGGCUUc -3'
miRNA:   3'- uuUUUGUaGCGCGCGCa----GCGCCGGAc -5'
29546 5' -55.8 NC_006151.1 + 38993 0.73 0.492556
Target:  5'- ---cACAUCGcCGCGCGcCGCGGCg-- -3'
miRNA:   3'- uuuuUGUAGC-GCGCGCaGCGCCGgac -5'
29546 5' -55.8 NC_006151.1 + 105275 0.73 0.492556
Target:  5'- gGAGGACuuuggGCGCGCG-CGCGGCCg- -3'
miRNA:   3'- -UUUUUGuag--CGCGCGCaGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 120332 0.73 0.502318
Target:  5'- -cGGACGcCGCGCGCGcccgCGUGGCCg- -3'
miRNA:   3'- uuUUUGUaGCGCGCGCa---GCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 95008 0.73 0.512165
Target:  5'- aAAGGGCAUgacccCGCGCGCGUaGCGGCUg- -3'
miRNA:   3'- -UUUUUGUA-----GCGCGCGCAgCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 115632 0.73 0.52209
Target:  5'- -----aGUCGCGCGUggccaccagcauGUCGCGGCCg- -3'
miRNA:   3'- uuuuugUAGCGCGCG------------CAGCGCCGGac -5'
29546 5' -55.8 NC_006151.1 + 54390 0.73 0.52209
Target:  5'- ---cGCAccUGCGCGCG-CGCGGCCUc -3'
miRNA:   3'- uuuuUGUa-GCGCGCGCaGCGCCGGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.