Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29546 | 5' | -55.8 | NC_006151.1 | + | 57413 | 0.66 | 0.898151 |
Target: 5'- cGAAGACGcccUCGCaGCGCagcgucacguccGUCGCGGCg-- -3' miRNA: 3'- -UUUUUGU---AGCG-CGCG------------CAGCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 141890 | 0.66 | 0.890782 |
Target: 5'- -cGGGCAUCGagcuccaccuccaCGCGCccCGCGGCCg- -3' miRNA: 3'- uuUUUGUAGC-------------GCGCGcaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 129873 | 0.66 | 0.891464 |
Target: 5'- --uGGCGUCGCGCGC--CGCcGCCa- -3' miRNA: 3'- uuuUUGUAGCGCGCGcaGCGcCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 104642 | 0.66 | 0.891464 |
Target: 5'- --uGACGUa-CGUGCG-CGCGGCCg- -3' miRNA: 3'- uuuUUGUAgcGCGCGCaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 131129 | 0.66 | 0.891464 |
Target: 5'- gGGAGGC--CGCG-GCGcCGCGGCCg- -3' miRNA: 3'- -UUUUUGuaGCGCgCGCaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 59165 | 0.66 | 0.891464 |
Target: 5'- --cGGCGUCGCGCaGCaG-CGCGGCg-- -3' miRNA: 3'- uuuUUGUAGCGCG-CG-CaGCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 103671 | 0.66 | 0.896833 |
Target: 5'- aGAAGGCggCGCGCGCGgcgggggugcugCGCGccGCCg- -3' miRNA: 3'- -UUUUUGuaGCGCGCGCa-----------GCGC--CGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 105745 | 0.66 | 0.898151 |
Target: 5'- uGAAGCAgCGCGUgGCGgCGCG-CCUGg -3' miRNA: 3'- uUUUUGUaGCGCG-CGCaGCGCcGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 33112 | 0.66 | 0.898151 |
Target: 5'- gAGGAAgGUCuggGCGCGUGcCGCgGGCCg- -3' miRNA: 3'- -UUUUUgUAG---CGCGCGCaGCG-CCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 64465 | 0.66 | 0.898151 |
Target: 5'- --uGGCggCGCGCGcCGcCGCGGCg-- -3' miRNA: 3'- uuuUUGuaGCGCGC-GCaGCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 69636 | 0.66 | 0.898151 |
Target: 5'- --cGGCGUCcCGCGCGU-GCGGCg-- -3' miRNA: 3'- uuuUUGUAGcGCGCGCAgCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 72294 | 0.66 | 0.898151 |
Target: 5'- --cGGCGUCaCGCGCGUgaUGaCGGCCg- -3' miRNA: 3'- uuuUUGUAGcGCGCGCA--GC-GCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 86154 | 0.66 | 0.898151 |
Target: 5'- gGGGAGC-UCGCgcugacGCGCGagaUCGUGGCCg- -3' miRNA: 3'- -UUUUUGuAGCG------CGCGC---AGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 97007 | 0.66 | 0.898151 |
Target: 5'- gGGGGACA-CGCGCGCGUgUGCccGCCUu -3' miRNA: 3'- -UUUUUGUaGCGCGCGCA-GCGc-CGGAc -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 104123 | 0.66 | 0.898151 |
Target: 5'- ---uGCGccUGCGCGaCGUgGCGGCCg- -3' miRNA: 3'- uuuuUGUa-GCGCGC-GCAgCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 106761 | 0.66 | 0.898151 |
Target: 5'- -cGAGCAgcgCGaCGCGCGUgaGCG-CCUGg -3' miRNA: 3'- uuUUUGUa--GC-GCGCGCAg-CGCcGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 127548 | 0.66 | 0.898151 |
Target: 5'- aGGGGGCGUCGU---CGUCGUGGCCg- -3' miRNA: 3'- -UUUUUGUAGCGcgcGCAGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 142322 | 0.66 | 0.898151 |
Target: 5'- uGGGGGCc-CGCGCGC-UCGCGGCg-- -3' miRNA: 3'- -UUUUUGuaGCGCGCGcAGCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 52610 | 0.66 | 0.898151 |
Target: 5'- cGAAGGCGUCGuCGCGCaggaCGGCCg- -3' miRNA: 3'- -UUUUUGUAGC-GCGCGcagcGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 121421 | 0.66 | 0.898151 |
Target: 5'- cGGGGACGUCGCGgggcuCGCG-C-CGGCCUc -3' miRNA: 3'- -UUUUUGUAGCGC-----GCGCaGcGCCGGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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