Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29546 | 5' | -55.8 | NC_006151.1 | + | 81576 | 0.8 | 0.223154 |
Target: 5'- cGGAGCAgggucUCGCGCGCGUCGCcggGGCCg- -3' miRNA: 3'- uUUUUGU-----AGCGCGCGCAGCG---CCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 58739 | 0.79 | 0.228751 |
Target: 5'- ---cGCGUCGCGCaGCGcCGCGGCCa- -3' miRNA: 3'- uuuuUGUAGCGCG-CGCaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115437 | 0.79 | 0.228751 |
Target: 5'- gGAAGAgGUCGCGCGUGaugcgCGCGGCCa- -3' miRNA: 3'- -UUUUUgUAGCGCGCGCa----GCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 111270 | 0.78 | 0.26486 |
Target: 5'- cGGGAACcgCGCGgGCGggggguaCGCGGCCUGg -3' miRNA: 3'- -UUUUUGuaGCGCgCGCa------GCGCCGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 54510 | 0.77 | 0.305454 |
Target: 5'- -uGGACuUUGUGCGCGgcaUCGCGGCCUGc -3' miRNA: 3'- uuUUUGuAGCGCGCGC---AGCGCCGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 136748 | 0.77 | 0.320007 |
Target: 5'- -cGAGCGUCGCGCGCcUCGCcccGGCCa- -3' miRNA: 3'- uuUUUGUAGCGCGCGcAGCG---CCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115209 | 0.76 | 0.350651 |
Target: 5'- -cGGGCG-CGCGCGCGaUCGUGGCCg- -3' miRNA: 3'- uuUUUGUaGCGCGCGC-AGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 72374 | 0.75 | 0.409121 |
Target: 5'- --cGACcUCGCGCaGCGUCGCGuGCCg- -3' miRNA: 3'- uuuUUGuAGCGCG-CGCAGCGC-CGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 52176 | 0.75 | 0.417957 |
Target: 5'- gAAGGGCG-CGCGCGCGaaCGCGGCCc- -3' miRNA: 3'- -UUUUUGUaGCGCGCGCa-GCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 92136 | 0.75 | 0.383324 |
Target: 5'- ---cGCAUCGCGCGCGgCGCcaaGGCCa- -3' miRNA: 3'- uuuuUGUAGCGCGCGCaGCG---CCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 139234 | 0.74 | 0.435973 |
Target: 5'- ---cACAUCGCGCGCGUCuccggcgcGaCGGCCa- -3' miRNA: 3'- uuuuUGUAGCGCGCGCAG--------C-GCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 70890 | 0.74 | 0.454428 |
Target: 5'- cGAGAUcgCGCGCuGCGUCGUGcgcuGCCUGg -3' miRNA: 3'- uUUUUGuaGCGCG-CGCAGCGC----CGGAC- -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 134754 | 0.74 | 0.463813 |
Target: 5'- -cGAGCAgCGCGCGCGgggccCGCGGCUUc -3' miRNA: 3'- uuUUUGUaGCGCGCGCa----GCGCCGGAc -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 103290 | 0.74 | 0.445147 |
Target: 5'- aGGAGACG-CGCGCGCGgcucgCGCGGCg-- -3' miRNA: 3'- -UUUUUGUaGCGCGCGCa----GCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 54390 | 0.73 | 0.52209 |
Target: 5'- ---cGCAccUGCGCGCG-CGCGGCCUc -3' miRNA: 3'- uuuuUGUa-GCGCGCGCaGCGCCGGAc -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 120332 | 0.73 | 0.502318 |
Target: 5'- -cGGACGcCGCGCGCGcccgCGUGGCCg- -3' miRNA: 3'- uuUUUGUaGCGCGCGCa---GCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 38993 | 0.73 | 0.492556 |
Target: 5'- ---cACAUCGcCGCGCGcCGCGGCg-- -3' miRNA: 3'- uuuuUGUAGC-GCGCGCaGCGCCGgac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 115632 | 0.73 | 0.52209 |
Target: 5'- -----aGUCGCGCGUggccaccagcauGUCGCGGCCg- -3' miRNA: 3'- uuuuugUAGCGCGCG------------CAGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 105275 | 0.73 | 0.492556 |
Target: 5'- gGAGGACuuuggGCGCGCG-CGCGGCCg- -3' miRNA: 3'- -UUUUUGuag--CGCGCGCaGCGCCGGac -5' |
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29546 | 5' | -55.8 | NC_006151.1 | + | 95008 | 0.73 | 0.512165 |
Target: 5'- aAAGGGCAUgacccCGCGCGCGUaGCGGCUg- -3' miRNA: 3'- -UUUUUGUA-----GCGCGCGCAgCGCCGGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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