miRNA display CGI


Results 41 - 60 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 21554 0.67 0.453466
Target:  5'- gGGCCUGGGccucggcGAGC-CCGCCgagGGCCgCGCg -3'
miRNA:   3'- -CUGGGCCC-------CUCGaGGUGG---UCGGgGUG- -5'
29547 5' -64.6 NC_006151.1 + 49216 0.67 0.445595
Target:  5'- cGGCgCGGGGuccccGGCUcCCAC--GCCCCGCu -3'
miRNA:   3'- -CUGgGCCCC-----UCGA-GGUGguCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 117781 0.67 0.445595
Target:  5'- aGGCuCCGGGcgGGGCgccaCGCCcggcggggcggGGCCCCACg -3'
miRNA:   3'- -CUG-GGCCC--CUCGag--GUGG-----------UCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 26595 0.67 0.442989
Target:  5'- -cCUCGGGGGGCUCaaacacgucgucguCGCCcacgcuGGCCCCGu -3'
miRNA:   3'- cuGGGCCCCUCGAG--------------GUGG------UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 48763 0.67 0.43694
Target:  5'- aGCCaCGGGG-GCcgaCGCCuccGCCCCGCc -3'
miRNA:   3'- cUGG-GCCCCuCGag-GUGGu--CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 79594 0.67 0.43694
Target:  5'- --aCCGGGGAGC-CgGagcCCGGCgCCACa -3'
miRNA:   3'- cugGGCCCCUCGaGgU---GGUCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 130331 0.67 0.434362
Target:  5'- cGCUCGGGGAGCUcgcgcgCCGCggcgucgugguugaCGGCCgCGCg -3'
miRNA:   3'- cUGGGCCCCUCGA------GGUG--------------GUCGGgGUG- -5'
29547 5' -64.6 NC_006151.1 + 136826 0.67 0.428382
Target:  5'- cGCCgCGcGGGcucuGCgacgcggCCGCCGGCCUCGCg -3'
miRNA:   3'- cUGG-GC-CCCu---CGa------GGUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 107268 0.67 0.428382
Target:  5'- gGACCCGGccaccucggaGGAGCUguaCgGCCGGCCgagcuuCCGCa -3'
miRNA:   3'- -CUGGGCC----------CCUCGA---GgUGGUCGG------GGUG- -5'
29547 5' -64.6 NC_006151.1 + 88155 0.67 0.428382
Target:  5'- --gCCGGGGuGCUCCGCgcaGGCgCCGa -3'
miRNA:   3'- cugGGCCCCuCGAGGUGg--UCGgGGUg -5'
29547 5' -64.6 NC_006151.1 + 136663 0.67 0.428382
Target:  5'- -cCUCGGGGAGCgcgcggCCGCC-GCCuucuuccgCCACg -3'
miRNA:   3'- cuGGGCCCCUCGa-----GGUGGuCGG--------GGUG- -5'
29547 5' -64.6 NC_006151.1 + 80338 0.67 0.419084
Target:  5'- gGACCgGGGcGAGggcggcuCUCCGCCcGUCUCACa -3'
miRNA:   3'- -CUGGgCCC-CUC-------GAGGUGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 38581 0.67 0.403316
Target:  5'- cGCCCGGGGc---CCGCC-GCCCCGg -3'
miRNA:   3'- cUGGGCCCCucgaGGUGGuCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 142745 0.67 0.403316
Target:  5'- uGGCCgGGGGcccAGCUCUcccCCGGgcccCCCCACa -3'
miRNA:   3'- -CUGGgCCCC---UCGAGGu--GGUC----GGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 104965 0.68 0.395169
Target:  5'- uGCUgCGGGuGAcGCcgCCGCCGGCCUCGCu -3'
miRNA:   3'- cUGG-GCCC-CU-CGa-GGUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 31263 0.68 0.387129
Target:  5'- cGAgCCGGGGcccccggcccGCUCCACCGuGacaCCCACc -3'
miRNA:   3'- -CUgGGCCCCu---------CGAGGUGGU-Cg--GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 101608 0.68 0.387129
Target:  5'- uGGgCCGGGGccuucguGUUCUuCCuGCCCCACg -3'
miRNA:   3'- -CUgGGCCCCu------CGAGGuGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 39959 0.68 0.387129
Target:  5'- uGACCCcGGGcGCcgucgCCGCCGcgggcGCCCCGCc -3'
miRNA:   3'- -CUGGGcCCCuCGa----GGUGGU-----CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 20455 0.68 0.387129
Target:  5'- gGGCUCGGGG-GUggCGCCGGUCCCcCg -3'
miRNA:   3'- -CUGGGCCCCuCGagGUGGUCGGGGuG- -5'
29547 5' -64.6 NC_006151.1 + 134769 0.68 0.386331
Target:  5'- gGGCCCGcGGcuucGGCUCCACgGGCCugugaggCCGCg -3'
miRNA:   3'- -CUGGGC-CCc---UCGAGGUGgUCGG-------GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.