miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 100703 0.66 0.4875
Target:  5'- aGACCUGGaccgaggcgcgcgaGGAGCaggcgCCGCCcGCgCCCGCc -3'
miRNA:   3'- -CUGGGCC--------------CCUCGa----GGUGGuCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 142592 0.66 0.481138
Target:  5'- -uCCCGGcGGGGCUCUccuCUAGUCUgGCa -3'
miRNA:   3'- cuGGGCC-CCUCGAGGu--GGUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 13708 0.66 0.480232
Target:  5'- gGACgCGGGcacGGCUCCcccauugGCCGGUCCCGg -3'
miRNA:   3'- -CUGgGCCCc--UCGAGG-------UGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 129371 0.66 0.47212
Target:  5'- cGCUCGGGGuuccGGCacgcCCACCAGCUCUg- -3'
miRNA:   3'- cUGGGCCCC----UCGa---GGUGGUCGGGGug -5'
29547 5' -64.6 NC_006151.1 + 138550 0.66 0.47212
Target:  5'- cGGCCUGGGcgcguacuacgcGAccgucGC-CCGCCuGCCCCACc -3'
miRNA:   3'- -CUGGGCCC------------CU-----CGaGGUGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 17301 0.66 0.47212
Target:  5'- -cCCCGGGcuucGAGCcgUCCGCCggggGGCgCCGCg -3'
miRNA:   3'- cuGGGCCC----CUCG--AGGUGG----UCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 21332 0.66 0.47212
Target:  5'- cGGCgCGGcGGGGgUCCGCggcuggaaCGGCUCCGCg -3'
miRNA:   3'- -CUGgGCC-CCUCgAGGUG--------GUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 37150 0.66 0.471223
Target:  5'- cGCgCCGGGccGCcaccgucUCCGCCGGCgCCCGCc -3'
miRNA:   3'- cUG-GGCCCcuCG-------AGGUGGUCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 8195 0.66 0.469431
Target:  5'- -cCCCGGGGGcGCUCCgggagacgaagaggGCCGGguCCCCu- -3'
miRNA:   3'- cuGGGCCCCU-CGAGG--------------UGGUC--GGGGug -5'
29547 5' -64.6 NC_006151.1 + 2393 0.66 0.463188
Target:  5'- aGGCCCucGGGGccgcggAGCUCgGCgaGGCCCCGg -3'
miRNA:   3'- -CUGGG--CCCC------UCGAGgUGg-UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 102036 0.66 0.463188
Target:  5'- -gUCC-GGGAGCUggaGCUGGCCCCGCu -3'
miRNA:   3'- cuGGGcCCCUCGAgg-UGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 121777 0.66 0.463188
Target:  5'- cGACCCcgcGGuGGuGCgcgaGCUGGCCCCACg -3'
miRNA:   3'- -CUGGG---CC-CCuCGagg-UGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 139646 0.66 0.463188
Target:  5'- cGGCgCGGGGgucgcggcgGGCgcgCCGCCcgacaGGCCCUGCg -3'
miRNA:   3'- -CUGgGCCCC---------UCGa--GGUGG-----UCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 13435 0.66 0.463188
Target:  5'- -cCCCGGGGcccGCaUUgGCCGGUCCCGg -3'
miRNA:   3'- cuGGGCCCCu--CG-AGgUGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 81358 0.66 0.463188
Target:  5'- cGCCCGGGGccccGGCgggCGCCAGCgcgagCCGCg -3'
miRNA:   3'- cUGGGCCCC----UCGag-GUGGUCGg----GGUG- -5'
29547 5' -64.6 NC_006151.1 + 101751 0.66 0.4623
Target:  5'- gGACCCGGcGGccgccGCgCCGCCgacgcggGGCCCCGg -3'
miRNA:   3'- -CUGGGCC-CCu----CGaGGUGG-------UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 98647 0.67 0.457872
Target:  5'- aGGCCCuGGcGGGcgcgcGCUCCgccgacgacguccugGCCGcGCCCCGCg -3'
miRNA:   3'- -CUGGG-CC-CCU-----CGAGG---------------UGGU-CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 109639 0.67 0.454345
Target:  5'- -cCCCGGGcGAGaggagCCGCCGcuGCCgCCACc -3'
miRNA:   3'- cuGGGCCC-CUCga---GGUGGU--CGG-GGUG- -5'
29547 5' -64.6 NC_006151.1 + 5870 0.67 0.454345
Target:  5'- cGCCCGGGG----CCGCCgggGGCCCCGg -3'
miRNA:   3'- cUGGGCCCCucgaGGUGG---UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 120358 0.67 0.454345
Target:  5'- gGGCUCGcGGGcGC-CUACCAGCgCCCGg -3'
miRNA:   3'- -CUGGGC-CCCuCGaGGUGGUCG-GGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.