miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 21622 0.68 0.374492
Target:  5'- aGGCCCGcGGGAGCgUCCggccguucuugcgguACCAGUaguucaCCACc -3'
miRNA:   3'- -CUGGGC-CCCUCG-AGG---------------UGGUCGg-----GGUG- -5'
29547 5' -64.6 NC_006151.1 + 22135 0.66 0.508675
Target:  5'- cACCUGcGGGucggagaucAGCgCCACCA-CCCCGCa -3'
miRNA:   3'- cUGGGC-CCC---------UCGaGGUGGUcGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 25402 0.75 0.127573
Target:  5'- cGACCgCGacGGGGGCgCCGCC-GCCCCACg -3'
miRNA:   3'- -CUGG-GC--CCCUCGaGGUGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 26595 0.67 0.442989
Target:  5'- -cCUCGGGGGGCUCaaacacgucgucguCGCCcacgcuGGCCCCGu -3'
miRNA:   3'- cuGGGCCCCUCGAG--------------GUGG------UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 27268 0.69 0.333946
Target:  5'- uACUCGGGGuGCUCgACgacgUAGCgCCCGCg -3'
miRNA:   3'- cUGGGCCCCuCGAGgUG----GUCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 28279 0.65 0.514263
Target:  5'- -cCCCGGGGAcgcgggcccgGCUCCcccauugGCCGGCgcguccccggggcgCCCGCc -3'
miRNA:   3'- cuGGGCCCCU----------CGAGG-------UGGUCG--------------GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 30784 0.66 0.508675
Target:  5'- aGGCUCaGGGuGUUCCAgCCgauGGCCCCGg -3'
miRNA:   3'- -CUGGGcCCCuCGAGGU-GG---UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 31263 0.68 0.387129
Target:  5'- cGAgCCGGGGcccccggcccGCUCCACCGuGacaCCCACc -3'
miRNA:   3'- -CUgGGCCCCu---------CGAGGUGGU-Cg--GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 33998 0.71 0.244199
Target:  5'- -cCCCGGaGGGGCgUCCcggcgcGCCGGCCCgGCc -3'
miRNA:   3'- cuGGGCC-CCUCG-AGG------UGGUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 34078 0.69 0.34858
Target:  5'- -cCCCGGGGucccggcccgAGgUCCAUUuugGGCCCCGCc -3'
miRNA:   3'- cuGGGCCCC----------UCgAGGUGG---UCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 36329 0.66 0.499419
Target:  5'- -uCCCGGGccGGCUCCGggccCCGGCCgCCGa -3'
miRNA:   3'- cuGGGCCCc-UCGAGGU----GGUCGG-GGUg -5'
29547 5' -64.6 NC_006151.1 + 37150 0.66 0.471223
Target:  5'- cGCgCCGGGccGCcaccgucUCCGCCGGCgCCCGCc -3'
miRNA:   3'- cUG-GGCCCcuCG-------AGGUGGUCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 37241 0.7 0.279962
Target:  5'- -cCCCGGccccGGAGC-CCGcCCGGCcCCCGCg -3'
miRNA:   3'- cuGGGCC----CCUCGaGGU-GGUCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 37352 0.72 0.202511
Target:  5'- cGCUCGGGGAGC-CCuggcCCGGCUCCGa -3'
miRNA:   3'- cUGGGCCCCUCGaGGu---GGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 38316 0.66 0.490239
Target:  5'- gGGCCCGcGGAGCccgcgCCcgGCCuGCcCCCGCu -3'
miRNA:   3'- -CUGGGCcCCUCGa----GG--UGGuCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 38420 0.7 0.292776
Target:  5'- -cCCCGGcuccGGGC-CCuCCAGCCCCGCc -3'
miRNA:   3'- cuGGGCCc---CUCGaGGuGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 38581 0.67 0.403316
Target:  5'- cGCCCGGGGc---CCGCC-GCCCCGg -3'
miRNA:   3'- cUGGGCCCCucgaGGUGGuCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 39088 0.68 0.361374
Target:  5'- cGACCCGcugccccacGaGGAGCUCUgcGCCGagcccgccgagggcGCCCCGCg -3'
miRNA:   3'- -CUGGGC---------C-CCUCGAGG--UGGU--------------CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 39476 0.75 0.127573
Target:  5'- uGGCCCGGGugccgcGAGCUCCGCgCGGCCgUGCu -3'
miRNA:   3'- -CUGGGCCC------CUCGAGGUG-GUCGGgGUG- -5'
29547 5' -64.6 NC_006151.1 + 39847 0.69 0.319766
Target:  5'- cGGCcgCCGGGGccucgccgAGCUCCG-CGGCCCCGa -3'
miRNA:   3'- -CUG--GGCCCC--------UCGAGGUgGUCGGGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.