miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 2334 0.71 0.261584
Target:  5'- cGGCCuCGGcgucGGGCUCCAgCAGCgCCGCg -3'
miRNA:   3'- -CUGG-GCCc---CUCGAGGUgGUCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 2393 0.66 0.463188
Target:  5'- aGGCCCucGGGGccgcggAGCUCgGCgaGGCCCCGg -3'
miRNA:   3'- -CUGGG--CCCC------UCGAGgUGg-UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 3862 0.7 0.292776
Target:  5'- aGGCCgGaGGGGGCgcccgccgCCGCCGGCgCCgGCg -3'
miRNA:   3'- -CUGGgC-CCCUCGa-------GGUGGUCG-GGgUG- -5'
29547 5' -64.6 NC_006151.1 + 3940 0.7 0.299353
Target:  5'- aGGCCgGGcGcGGGCUCCGCgGGCCCgGg -3'
miRNA:   3'- -CUGGgCC-C-CUCGAGGUGgUCGGGgUg -5'
29547 5' -64.6 NC_006151.1 + 5731 0.69 0.319766
Target:  5'- uGGCgCCGGGGuccgaGGCcgcgCCGCCGGCCCgGg -3'
miRNA:   3'- -CUG-GGCCCC-----UCGa---GGUGGUCGGGgUg -5'
29547 5' -64.6 NC_006151.1 + 5870 0.67 0.454345
Target:  5'- cGCCCGGGG----CCGCCgggGGCCCCGg -3'
miRNA:   3'- cUGGGCCCCucgaGGUGG---UCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 8195 0.66 0.469431
Target:  5'- -cCCCGGGGGcGCUCCgggagacgaagaggGCCGGguCCCCu- -3'
miRNA:   3'- cuGGGCCCCU-CGAGG--------------UGGUC--GGGGug -5'
29547 5' -64.6 NC_006151.1 + 8976 0.69 0.333226
Target:  5'- -cCCCGGGaagggucGGGCgauggccgCCGCCAccGCCCCACc -3'
miRNA:   3'- cuGGGCCC-------CUCGa-------GGUGGU--CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 13314 0.69 0.341206
Target:  5'- aGAUCCGGcccucGGGC-CCACguGCCCCAUu -3'
miRNA:   3'- -CUGGGCCc----CUCGaGGUGguCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 13394 0.66 0.498498
Target:  5'- -cUCCGGGGAcGCgCCggccaaugggggaGCCGGgCCCGCg -3'
miRNA:   3'- cuGGGCCCCU-CGaGG-------------UGGUCgGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 13435 0.66 0.463188
Target:  5'- -cCCCGGGGcccGCaUUgGCCGGUCCCGg -3'
miRNA:   3'- cuGGGCCCCu--CG-AGgUGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 13708 0.66 0.480232
Target:  5'- gGACgCGGGcacGGCUCCcccauugGCCGGUCCCGg -3'
miRNA:   3'- -CUGgGCCCc--UCGAGG-------UGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 13954 0.69 0.326799
Target:  5'- -cCCCGGGGAcGCgCCggccaugggggaGCCGGgCCCGCg -3'
miRNA:   3'- cuGGGCCCCU-CGaGG------------UGGUCgGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 14673 0.69 0.34858
Target:  5'- cGGCgUCGGGGAGCcucgcCCACCcacccGGCCCC-Cg -3'
miRNA:   3'- -CUG-GGCCCCUCGa----GGUGG-----UCGGGGuG- -5'
29547 5' -64.6 NC_006151.1 + 14932 0.69 0.341206
Target:  5'- -uCCCGGGGAGCagCCcCCcgucCCCCGCc -3'
miRNA:   3'- cuGGGCCCCUCGa-GGuGGuc--GGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 17301 0.66 0.47212
Target:  5'- -cCCCGGGcuucGAGCcgUCCGCCggggGGCgCCGCg -3'
miRNA:   3'- cuGGGCCC----CUCG--AGGUGG----UCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 18418 0.68 0.371377
Target:  5'- cGCCgGGGGAGgagggCCGCCGGCgggcgucgCCCGCc -3'
miRNA:   3'- cUGGgCCCCUCga---GGUGGUCG--------GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 20455 0.68 0.387129
Target:  5'- gGGCUCGGGG-GUggCGCCGGUCCCcCg -3'
miRNA:   3'- -CUGGGCCCCuCGagGUGGUCGGGGuG- -5'
29547 5' -64.6 NC_006151.1 + 21332 0.66 0.47212
Target:  5'- cGGCgCGGcGGGGgUCCGCggcuggaaCGGCUCCGCg -3'
miRNA:   3'- -CUGgGCC-CCUCgAGGUG--------GUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 21554 0.67 0.453466
Target:  5'- gGGCCUGGGccucggcGAGC-CCGCCgagGGCCgCGCg -3'
miRNA:   3'- -CUGGGCCC-------CUCGaGGUGG---UCGGgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.