miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 142745 0.67 0.403316
Target:  5'- uGGCCgGGGGcccAGCUCUcccCCGGgcccCCCCACa -3'
miRNA:   3'- -CUGGgCCCC---UCGAGGu--GGUC----GGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 142592 0.66 0.481138
Target:  5'- -uCCCGGcGGGGCUCUccuCUAGUCUgGCa -3'
miRNA:   3'- cuGGGCC-CCUCGAGGu--GGUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 141885 0.77 0.092045
Target:  5'- aGGgCCGGGcaucGAGCUCCACCuccacgcGCCCCGCg -3'
miRNA:   3'- -CUgGGCCC----CUCGAGGUGGu------CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 140406 0.69 0.333946
Target:  5'- gGACCUGGGGGaCU-CGCCcGUCCCGCu -3'
miRNA:   3'- -CUGGGCCCCUcGAgGUGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 139646 0.66 0.463188
Target:  5'- cGGCgCGGGGgucgcggcgGGCgcgCCGCCcgacaGGCCCUGCg -3'
miRNA:   3'- -CUGgGCCCC---------UCGa--GGUGG-----UCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 138550 0.66 0.47212
Target:  5'- cGGCCUGGGcgcguacuacgcGAccgucGC-CCGCCuGCCCCACc -3'
miRNA:   3'- -CUGGGCCC------------CU-----CGaGGUGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 138334 0.68 0.356067
Target:  5'- gGGCCCGGcacgcgcgcAGC-CCGCCGGCCCgCACc -3'
miRNA:   3'- -CUGGGCCcc-------UCGaGGUGGUCGGG-GUG- -5'
29547 5' -64.6 NC_006151.1 + 137409 0.68 0.379198
Target:  5'- --gCCGGGGGGCgcccUCGCC-GCCgCCGCg -3'
miRNA:   3'- cugGGCCCCUCGa---GGUGGuCGG-GGUG- -5'
29547 5' -64.6 NC_006151.1 + 136826 0.67 0.428382
Target:  5'- cGCCgCGcGGGcucuGCgacgcggCCGCCGGCCUCGCg -3'
miRNA:   3'- cUGG-GC-CCCu---CGa------GGUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 136663 0.67 0.428382
Target:  5'- -cCUCGGGGAGCgcgcggCCGCC-GCCuucuuccgCCACg -3'
miRNA:   3'- cuGGGCCCCUCGa-----GGUGGuCGG--------GGUG- -5'
29547 5' -64.6 NC_006151.1 + 135169 0.66 0.512398
Target:  5'- cGGCCCGGacGGGCgCCggcugccgccgccggGCCAGUCCCAg -3'
miRNA:   3'- -CUGGGCCc-CUCGaGG---------------UGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 134769 0.68 0.386331
Target:  5'- gGGCCCGcGGcuucGGCUCCACgGGCCugugaggCCGCg -3'
miRNA:   3'- -CUGGGC-CCc---UCGAGGUGgUCGG-------GGUG- -5'
29547 5' -64.6 NC_006151.1 + 130718 0.73 0.193101
Target:  5'- cGGCCCGGGG-GC-CCGCgCGGCCgCgGCg -3'
miRNA:   3'- -CUGGGCCCCuCGaGGUG-GUCGG-GgUG- -5'
29547 5' -64.6 NC_006151.1 + 130331 0.67 0.434362
Target:  5'- cGCUCGGGGAGCUcgcgcgCCGCggcgucgugguugaCGGCCgCGCg -3'
miRNA:   3'- cUGGGCCCCUCGA------GGUG--------------GUCGGgGUG- -5'
29547 5' -64.6 NC_006151.1 + 129371 0.66 0.47212
Target:  5'- cGCUCGGGGuuccGGCacgcCCACCAGCUCUg- -3'
miRNA:   3'- cUGGGCCCC----UCGa---GGUGGUCGGGGug -5'
29547 5' -64.6 NC_006151.1 + 125237 0.72 0.212315
Target:  5'- gGGCCCGGc--GCUCCcCCGGCCCgGCg -3'
miRNA:   3'- -CUGGGCCccuCGAGGuGGUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 123770 0.66 0.499419
Target:  5'- gGGCCCcGGGGGCaUCgGCCcgGGCaCCACg -3'
miRNA:   3'- -CUGGGcCCCUCG-AGgUGG--UCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 121777 0.66 0.463188
Target:  5'- cGACCCcgcGGuGGuGCgcgaGCUGGCCCCACg -3'
miRNA:   3'- -CUGGG---CC-CCuCGagg-UGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 121463 0.66 0.490239
Target:  5'- gGAgCUGGGGGGCaagCGCCcGCCCC-Cg -3'
miRNA:   3'- -CUgGGCCCCUCGag-GUGGuCGGGGuG- -5'
29547 5' -64.6 NC_006151.1 + 121424 0.72 0.212315
Target:  5'- gGACgUCGcGGGGCUCgCGCCGGCCUCGCu -3'
miRNA:   3'- -CUG-GGCcCCUCGAG-GUGGUCGGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.