miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 83430 0.78 0.077812
Target:  5'- --gCCGGGGGGCUCCccgggcagcguggccGCCAGgCCCACg -3'
miRNA:   3'- cugGGCCCCUCGAGG---------------UGGUCgGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 108157 0.77 0.08974
Target:  5'- aGCCgCGGGGuGCUCCcCCcGCCCCGCc -3'
miRNA:   3'- cUGG-GCCCCuCGAGGuGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 141885 0.77 0.092045
Target:  5'- aGGgCCGGGcaucGAGCUCCACCuccacgcGCCCCGCg -3'
miRNA:   3'- -CUgGGCCC----CUCGAGGUGGu------CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 25402 0.75 0.127573
Target:  5'- cGACCgCGacGGGGGCgCCGCC-GCCCCACg -3'
miRNA:   3'- -CUGG-GC--CCCUCGaGGUGGuCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 39476 0.75 0.127573
Target:  5'- uGGCCCGGGugccgcGAGCUCCGCgCGGCCgUGCu -3'
miRNA:   3'- -CUGGGCCC------CUCGAGGUG-GUCGGgGUG- -5'
29547 5' -64.6 NC_006151.1 + 40069 0.74 0.155371
Target:  5'- cGGCCCGcGGGGGCcucgggcgCCgggGCCGGCCCCGg -3'
miRNA:   3'- -CUGGGC-CCCUCGa-------GG---UGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 109796 0.73 0.175428
Target:  5'- -uCCCGccGGAGUuugcgCCGCCGGCCCCGCg -3'
miRNA:   3'- cuGGGCc-CCUCGa----GGUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 130718 0.73 0.193101
Target:  5'- cGGCCCGGGG-GC-CCGCgCGGCCgCgGCg -3'
miRNA:   3'- -CUGGGCCCCuCGaGGUG-GUCGG-GgUG- -5'
29547 5' -64.6 NC_006151.1 + 37352 0.72 0.202511
Target:  5'- cGCUCGGGGAGC-CCuggcCCGGCUCCGa -3'
miRNA:   3'- cUGGGCCCCUCGaGGu---GGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 125237 0.72 0.212315
Target:  5'- gGGCCCGGc--GCUCCcCCGGCCCgGCg -3'
miRNA:   3'- -CUGGGCCccuCGAGGuGGUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 121424 0.72 0.212315
Target:  5'- gGACgUCGcGGGGCUCgCGCCGGCCUCGCu -3'
miRNA:   3'- -CUG-GGCcCCUCGAG-GUGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 107573 0.72 0.217369
Target:  5'- aGCCCGcGGAGCUgacucCCGCCgccaagcuGGCCCCGCc -3'
miRNA:   3'- cUGGGCcCCUCGA-----GGUGG--------UCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 87067 0.72 0.217369
Target:  5'- -cCCCGGGGAgGCgCCGCC--CCCCGCg -3'
miRNA:   3'- cuGGGCCCCU-CGaGGUGGucGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 50372 0.71 0.227786
Target:  5'- cGCCgGcGGGGGCgagaCGCgGGCCCCGCg -3'
miRNA:   3'- cUGGgC-CCCUCGag--GUGgUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 66693 0.71 0.233151
Target:  5'- -gUCCGGGGccUUCCGCCAGCUCCGg -3'
miRNA:   3'- cuGGGCCCCucGAGGUGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 50459 0.71 0.233151
Target:  5'- cGCCCGcGGGcGCUCgCGCCAGCgCgGCg -3'
miRNA:   3'- cUGGGC-CCCuCGAG-GUGGUCGgGgUG- -5'
29547 5' -64.6 NC_006151.1 + 55461 0.71 0.236969
Target:  5'- cGGCCCcgccGGGGGGCgcgcgCCcggcgccgcggacgGCCAGCCgCCGCg -3'
miRNA:   3'- -CUGGG----CCCCUCGa----GG--------------UGGUCGG-GGUG- -5'
29547 5' -64.6 NC_006151.1 + 98073 0.71 0.244199
Target:  5'- cGGCCUGGGGcucGCaaaagUCCGCCAGCgUCACc -3'
miRNA:   3'- -CUGGGCCCCu--CG-----AGGUGGUCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 33998 0.71 0.244199
Target:  5'- -cCCCGGaGGGGCgUCCcggcgcGCCGGCCCgGCc -3'
miRNA:   3'- cuGGGCC-CCUCG-AGG------UGGUCGGGgUG- -5'
29547 5' -64.6 NC_006151.1 + 52384 0.71 0.25568
Target:  5'- gGGCCCGcGGGGGCggcgggcgCCGCCGcGCCCgAg -3'
miRNA:   3'- -CUGGGC-CCCUCGa-------GGUGGU-CGGGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.