miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 5' -64.6 NC_006151.1 + 47071 0.71 0.261584
Target:  5'- -uCCCGGuccuGCUCCGgcucCCGGCCCCGCa -3'
miRNA:   3'- cuGGGCCccu-CGAGGU----GGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 2334 0.71 0.261584
Target:  5'- cGGCCuCGGcgucGGGCUCCAgCAGCgCCGCg -3'
miRNA:   3'- -CUGG-GCCc---CUCGAGGUgGUCGgGGUG- -5'
29547 5' -64.6 NC_006151.1 + 98030 0.71 0.261584
Target:  5'- -uCCgCGGGGuggcgcagcgcgAGCaCCACCAGCCCCGg -3'
miRNA:   3'- cuGG-GCCCC------------UCGaGGUGGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 48588 0.7 0.268206
Target:  5'- cGCCCGGGGuGCgccucgucgugccugCCGCC-GCCgCCGCu -3'
miRNA:   3'- cUGGGCCCCuCGa--------------GGUGGuCGG-GGUG- -5'
29547 5' -64.6 NC_006151.1 + 114449 0.7 0.273725
Target:  5'- uGCUCGGGGc-CUgCGCCGGCCaCCGCa -3'
miRNA:   3'- cUGGGCCCCucGAgGUGGUCGG-GGUG- -5'
29547 5' -64.6 NC_006151.1 + 37241 0.7 0.279962
Target:  5'- -cCCCGGccccGGAGC-CCGcCCGGCcCCCGCg -3'
miRNA:   3'- cuGGGCC----CCUCGaGGU-GGUCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 107744 0.7 0.279962
Target:  5'- aGCCCcGGGAGC-CCGCCcccaAGCCgCACu -3'
miRNA:   3'- cUGGGcCCCUCGaGGUGG----UCGGgGUG- -5'
29547 5' -64.6 NC_006151.1 + 38420 0.7 0.292776
Target:  5'- -cCCCGGcuccGGGC-CCuCCAGCCCCGCc -3'
miRNA:   3'- cuGGGCCc---CUCGaGGuGGUCGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 3862 0.7 0.292776
Target:  5'- aGGCCgGaGGGGGCgcccgccgCCGCCGGCgCCgGCg -3'
miRNA:   3'- -CUGGgC-CCCUCGa-------GGUGGUCG-GGgUG- -5'
29547 5' -64.6 NC_006151.1 + 65046 0.7 0.297368
Target:  5'- gGGCCCGGcGGcggcgGGCgcccguuaauaaagUCCAUCAGCaCCCGCg -3'
miRNA:   3'- -CUGGGCC-CC-----UCG--------------AGGUGGUCG-GGGUG- -5'
29547 5' -64.6 NC_006151.1 + 3940 0.7 0.299353
Target:  5'- aGGCCgGGcGcGGGCUCCGCgGGCCCgGg -3'
miRNA:   3'- -CUGGgCC-C-CUCGAGGUGgUCGGGgUg -5'
29547 5' -64.6 NC_006151.1 + 75036 0.69 0.306043
Target:  5'- gGGCCCGGGGAcgUCCACCucgGGCgCgACg -3'
miRNA:   3'- -CUGGGCCCCUcgAGGUGG---UCGgGgUG- -5'
29547 5' -64.6 NC_006151.1 + 82374 0.69 0.315602
Target:  5'- gGACgCCGGGcgcgucgaaggccacGAGCUCCGCgcccgagggCGGCCCCGa -3'
miRNA:   3'- -CUG-GGCCC---------------CUCGAGGUG---------GUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 5731 0.69 0.319766
Target:  5'- uGGCgCCGGGGuccgaGGCcgcgCCGCCGGCCCgGg -3'
miRNA:   3'- -CUG-GGCCCC-----UCGa---GGUGGUCGGGgUg -5'
29547 5' -64.6 NC_006151.1 + 39847 0.69 0.319766
Target:  5'- cGGCcgCCGGGGccucgccgAGCUCCG-CGGCCCCGa -3'
miRNA:   3'- -CUG--GGCCCC--------UCGAGGUgGUCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 13954 0.69 0.326799
Target:  5'- -cCCCGGGGAcGCgCCggccaugggggaGCCGGgCCCGCg -3'
miRNA:   3'- cuGGGCCCCU-CGaGG------------UGGUCgGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 109096 0.69 0.326799
Target:  5'- -cCCCGGaGGcccagugaGGCgagCCGCCGGCCCgCGCc -3'
miRNA:   3'- cuGGGCC-CC--------UCGa--GGUGGUCGGG-GUG- -5'
29547 5' -64.6 NC_006151.1 + 8976 0.69 0.333226
Target:  5'- -cCCCGGGaagggucGGGCgauggccgCCGCCAccGCCCCACc -3'
miRNA:   3'- cuGGGCCC-------CUCGa-------GGUGGU--CGGGGUG- -5'
29547 5' -64.6 NC_006151.1 + 45754 0.69 0.333226
Target:  5'- cGCCUGGGGgaucuuuGGCuUCUACC-GCCCCAg -3'
miRNA:   3'- cUGGGCCCC-------UCG-AGGUGGuCGGGGUg -5'
29547 5' -64.6 NC_006151.1 + 27268 0.69 0.333946
Target:  5'- uACUCGGGGuGCUCgACgacgUAGCgCCCGCg -3'
miRNA:   3'- cUGGGCCCCuCGAGgUG----GUCG-GGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.